Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20161
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69340.1 68414.m07956 appr-1-p processing enzyme family prote...    27   3.2  
At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplas...    27   4.2  

>At1g69340.1 68414.m07956 appr-1-p processing enzyme family protein
           contains Pfam domain PF01661: Appr-1-p processing enzyme
           family
          Length = 562

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 5/63 (7%)
 Frame = -2

Query: 181 RKHLSVLQLFVVTEPLL-----LLTMRHFTKKIVWNKHVNLNNTFTILLARFQSVANDSN 17
           RKH   LQ   V  P       +LTM+ F   +VW K V  +     LL  F+ V  +  
Sbjct: 475 RKHQRNLQAIYVLHPTFHLKATILTMQFFVDNVVWKKVVYADR----LLQLFKYVPREQL 530

Query: 16  TSP 8
           T P
Sbjct: 531 TIP 533


>At1g10130.1 68414.m01142 calcium-transporting ATPase 3, endoplasmic
           reticulum-type (ACA6) (ECA3) nearly identical to
           SP|Q9SY55 Calcium-transporting ATPase 3, endoplasmic
           reticulum-type (EC 3.6.3.8) {Arabidopsis thaliana);
           contains InterPro Accession IPR006069: Cation
           transporting ATPase
          Length = 998

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 179 KTFVCITVICCYRTTTIIDNATLY*KNCLEQTRE 78
           +T  C TVIC  +T T+  N     K C+ Q+ E
Sbjct: 336 ETLGCTTVICSDKTGTLTTNMMSVSKICVVQSAE 369


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,230,524
Number of Sequences: 28952
Number of extensions: 98425
Number of successful extensions: 154
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 399440640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)