Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20159
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   1.2  
SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4 |Schi...    27   2.1  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    27   2.8  
SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomy...    26   3.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    26   3.7  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    26   5.0  
SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase Mpg1|Sc...    25   6.5  
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    25   6.5  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.5  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   6.5  
SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomy...    25   8.7  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 244 ISNTVELPGLRSSVVKVLKSTLAACGKRRS 155
           IS    LP L+S++V  ++STL  CG + S
Sbjct: 430 ISTIYILPFLKSTIVSSVQSTLQVCGAQTS 459


>SPAC22A12.03c |csn4||COP9/signalosome complex subunit Csn4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 377

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = -1

Query: 513 NDFLLSLINLNVSFLASYRYILGGMLQALHVTMA*L--APGENMADTCLQVGSLHE 352
           ND L SL+++ VS   S   +   ++  L+V +  L  AP E +   CLQ+ +++E
Sbjct: 53  NDVLFSLLDVAVSI--SSLELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYE 106


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
 Frame = +2

Query: 266 NTVYYIVAPGNLPWLRQIWATSGGVVRCISCKEPTCRHVSAMFSPGANYAIVTCSACNI- 442
           N +YYI++ GN       W+     V+    KE    H S MF    NYAI+T S   I 
Sbjct: 538 NKIYYILSKGNY---FVDWSICDEYVKRF--KED---HFSFMFKKEENYAIITLSLVKIA 589

Query: 443 -PPKIYLYD 466
             P   LY+
Sbjct: 590 STPMSKLYE 598


>SPCC18B5.05c |||phosphomethylpyrimidine kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 327

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 413 AIVTCSACNIPPKIYLYDAKKE-TFKLIKDNKKSLVPYK 526
           AI +  ACNIPP   +++A     + + + +KKS  PYK
Sbjct: 247 AIASNLACNIPPLQAIHEALYSIEWAIQRVHKKSSDPYK 285


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 371 CRHVSAMFSPGANYAIVTCSACNIPPKIYLYDAKKETFK 487
           C   SA+     N     C AC I P   L+DAK+ T +
Sbjct: 144 CILCSALEKINVNELFYMCRACVIYPITPLWDAKERTMR 182


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 416 IVTCSACNIPPKIYLYDAKKETFKLIKDNKKSLVPYKCTNYLLPIFI 556
           I TC     P +  L    + TF++ K  K S+ P   T YL   +I
Sbjct: 524 IATCDKPEDPHQFKLQSGDQNTFRISKKKKPSICPIAYT-YLWHAYI 569


>SPCC1906.01 |mpg1||mannose-1-phosphate guanyltransferase
           Mpg1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 363

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 327 LPAVWLDVSRAKNRLVGTC 383
           L   W+DV + K+ L GTC
Sbjct: 213 LEGYWMDVGQPKDYLTGTC 231


>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1588

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
 Frame = +2

Query: 311  RQIWATSGGVVRCISCKE---PTCRHVSA-MFSPGANYAIVTCSACNIPPKIYLYDAK 472
            RQ +A S G V+C +C E     C  +S+ + S  +NYA   C  C+   K+Y ++ +
Sbjct: 1460 RQPFAISDGTVQCHNCLEWFHYECVGLSSDIVSTLSNYACPDC--CSKEGKLYPWNTR 1515


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 247 TISNTVELPGLRSSVVKVLKSTLAACGKRRSA*YKGCISTILVPVL-SKIGSLMSIQPFG 71
           +++  V L  L S +   LKS L +  +  +   K CI TI  P+L +K+  ++  +  G
Sbjct: 136 SLTRVVGLKDLESDISTALKSYLQSLCENGNNLVKTCIDTI--PILDNKVSEILKSEAGG 193

Query: 70  SV 65
            +
Sbjct: 194 QI 195


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 432 PATSLLKYTCMMPRKRHSN*LKTTKNHWYPT 524
           P  SL KYTC++P       L T  +H + T
Sbjct: 52  PTFSLSKYTCVLPASIPEMILFTFSSHTFQT 82


>SPBP4G3.03 |||PI31 proteasome regulator related|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 241

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 458 LYDAKKETFKLIKDNKKSLVPYKCTNY 538
           L   KKE  KL  DN++S +P+  T +
Sbjct: 106 LLTTKKEHKKLDNDNRESEIPFSDTRF 132


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,164
Number of Sequences: 5004
Number of extensions: 62109
Number of successful extensions: 169
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)