Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20159
         (609 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0650 + 23157130-23157582,23157687-23157898,23157982-231581...    28   5.0  
01_06_0897 + 32830328-32831176                                         28   5.0  
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325...    27   8.8  

>06_03_0650 +
           23157130-23157582,23157687-23157898,23157982-23158128,
           23158214-23158347,23158442-23158551,23158711-23158817,
           23159045-23159183,23159286-23159402,23159737-23159844,
           23159927-23159998,23160108-23160230,23160336-23160495,
           23160585-23160706,23160825-23160962,23161042-23161184,
           23161305-23161367,23161567-23161630,23161709-23161844,
           23162123-23162196,23162764-23162858,23162951-23162982,
           23163104-23163276
          Length = 973

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 438 TSLLKYTCMMPRKRHSN*LKTTKNHWY 518
           TSLLK TC  PR++  + L+T + + Y
Sbjct: 454 TSLLKVTCRRPREQEMDILQTVQQNGY 480


>01_06_0897 + 32830328-32831176
          Length = 282

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -3

Query: 214 RSSVVKVLKSTLAACGKRRSA*YKGCISTILVPVLSKIGSLMSIQPFG 71
           R S+   +   +A CG R  A   GC  + L    +   + MS  P G
Sbjct: 91  RESLAAAVADVVAGCGARAGAWLDGCYRSYLAAYAADTNTTMSPSPAG 138


>06_01_0456 -
           3249662-3249710,3249838-3250451,3250694-3250780,
           3251509-3252384,3252445-3252534,3252645-3252696,
           3253117-3253168,3253265-3253363,3253444-3253528,
           3253620-3253668,3253749-3253816,3254417-3254482,
           3255690-3255741,3256685-3256767,3256915-3256946,
           3257271-3257466,3258542-3258607,3259797-3259869,
           3260010-3260224
          Length = 967

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +2

Query: 329 SGGVVRCISCKEPTCRHVSAMFSPG---ANYAIVTCSACNI 442
           S  +V  ISCK P CR ++ M+      A+ A+ TCS  NI
Sbjct: 108 SSVMVLMISCKSPGCR-LTGMYGAVEAIASAAVTTCSMRNI 147


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,051,231
Number of Sequences: 37544
Number of extensions: 404296
Number of successful extensions: 971
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)