Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20159
         (609 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)                 30   1.7  
SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_51890| Best HMM Match : BCCT (HMM E-Value=0)                        29   3.9  
SB_16948| Best HMM Match : C1_4 (HMM E-Value=0.62)                     29   3.9  
SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)                  28   6.8  

>SB_31115| Best HMM Match : zf-CCCH (HMM E-Value=0.039)
          Length = 485

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -3

Query: 388 GRHVPTSRFFARDTSNHTAGSCPYL 314
           GRH PT   F R  S+HT   CP+L
Sbjct: 174 GRHGPTLDEFLRKGSSHTPKVCPFL 198


>SB_21594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1075

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 114 TGTKMVEIQPLYHAERRFPHAARVDFNTLTTEDL 215
           TGT  + +QP        P A R+DF+ +T  DL
Sbjct: 44  TGTLQIRLQPKKFHRTMKPGAPRIDFSRMTQPDL 77


>SB_51890| Best HMM Match : BCCT (HMM E-Value=0)
          Length = 677

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = -2

Query: 146 QRLYLHHFS--SSFVENWVVNVDPAVWFRVFFHYATFIFLQV 27
           Q+++L+H     +F+ N+ + +   +WF VFF+  T+  L +
Sbjct: 296 QKMHLNHLQLKETFMINYQLRLGMFIWFVVFFYDDTWYILNI 337


>SB_16948| Best HMM Match : C1_4 (HMM E-Value=0.62)
          Length = 378

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 20/87 (22%), Positives = 33/87 (37%)
 Frame = +2

Query: 326 TSGGVVRCISCKEPTCRHVSAMFSPGANYAIVTCSACNIPPKIYLYDAKKETFKLIKDNK 505
           T G  +     +EP+C   ++ F    +  I+ C  C+I       + K     +I+   
Sbjct: 261 TEGKCLGVTLTREPSCIACNSSFKEQVSDGIIKCLNCHISLLQESCNTKLVGHLVIRLPN 320

Query: 506 KSLVPYKCTNYLLPIFIAMSNRKPKVN 586
                Y C N  L  F+A    K  +N
Sbjct: 321 GKFQNYACFNDALQSFLASIGNKTDIN 347


>SB_46326| Best HMM Match : Scramblase (HMM E-Value=0)
          Length = 554

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +2

Query: 341 VRCISCKEPTCRHVSAMFSPGANYAIVTCSACNI-PPKIYLYDAKKETFKLIK 496
           +RC SC  P C     + SP        C + +I  PK  L DA ++T   I+
Sbjct: 357 LRCSSCWFPCCLQEVEVQSPPGTVVGYCCQSWSICIPKYTLQDANRQTILQIE 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,906,408
Number of Sequences: 59808
Number of extensions: 471461
Number of successful extensions: 1114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1067
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1114
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)