Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20159
         (609 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   4.1  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   4.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   4.1  
AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.              22   5.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   7.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.1  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        21   9.4  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 164 TTFSMIQRLYLHHFSSSFVENWVVNVDPAVWFRV 63
           TT  +  +  L  F  SFV N V NV+   W R+
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVNSVQWPRL 515


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 133 STILVPVLSKIGSLMSIQP 77
           STIL PV  K+ S   +QP
Sbjct: 804 STILSPVREKLSSSQPMQP 822


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 164 TTFSMIQRLYLHHFSSSFVENWVVNVDPAVWFRV 63
           TT  +  +  L  F  SFV N V NV+   W R+
Sbjct: 482 TTNDIKMQKVLIDFWVSFVNNGVPNVNSVQWPRL 515


>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 6/16 (37%), Positives = 12/16 (75%)
 Frame = -2

Query: 188 IDPCGVRETTFSMIQR 141
           ++ CG+ ETT++ I +
Sbjct: 44  MEACGIHETTYNSIMK 59


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  INDPIFDKTGTKMVEIQPLYHA 155
           ++DPIFDK     + I  L H+
Sbjct: 210 VSDPIFDKKAMSDLVICKLSHS 231


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 90  INDPIFDKTGTKMVEIQPLYHA 155
           ++DPIFDK     + I  L H+
Sbjct: 210 VSDPIFDKKAMSDLVICKLSHS 231


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 95  RPNFRQNW 118
           RP FRQNW
Sbjct: 148 RPIFRQNW 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,464
Number of Sequences: 438
Number of extensions: 4547
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)