Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0B7S7 Cluster: Putative transmembrane protein; n=1; Me...    33   2.7  
UniRef50_Q8S188 Cluster: Putative uncharacterized protein B1144G...    31   8.1  

>UniRef50_A0B7S7 Cluster: Putative transmembrane protein; n=1;
           Methanosaeta thermophila PT|Rep: Putative transmembrane
           protein - Methanosaeta thermophila (strain DSM 6194 /
           PT) (Methanothrixthermophila (strain DSM 6194 / PT))
          Length = 387

 Score = 32.7 bits (71), Expect = 2.7
 Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
 Frame = +2

Query: 248 LLLLIH-IKFNLKALTKKYIKVFILCIYSFFSIHLF 352
           LLLLI+ IK+N  +   K + VFIL   SF++++LF
Sbjct: 103 LLLLINGIKYNYMSFGIKTLHVFILTFISFYAVYLF 138


>UniRef50_Q8S188 Cluster: Putative uncharacterized protein
           B1144G04.22; n=2; Oryza sativa|Rep: Putative
           uncharacterized protein B1144G04.22 - Oryza sativa
           subsp. japonica (Rice)
          Length = 967

 Score = 31.1 bits (67), Expect = 8.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 372 HKVATXPNKWIEKNE*IHRIKTFIYFFVSAFKLNLIWISSKS 247
           H +    + W+E NE + R+ T I F +    L L+W S +S
Sbjct: 722 HYIPISADGWLELNEVMLRVPTLIAFALHLCLLQLVWSSRRS 763


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 319,499,696
Number of Sequences: 1657284
Number of extensions: 5185523
Number of successful extensions: 10149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10142
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16503508437
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)