Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo...    25   5.6  
SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyc...    24   7.4  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    24   9.8  
SPBP4H10.04 |ppb1||calcineurin catalytic subunit Ppb1|Schizosacc...    24   9.8  

>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 5.6
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -2

Query: 395 AFDAMNMCIKLQLCQINGS 339
           +FD++ MC+   LC++N S
Sbjct: 177 SFDSLGMCLDTILCRLNHS 195


>SPCC11E10.05c |ynd1||nucleoside diphosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 572

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 299 YIKVFILCIYSFFSIHLFG 355
           +I  FI C++  FS+ LFG
Sbjct: 473 FILSFIFCLFFLFSLVLFG 491


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = -1

Query: 378 HVHKVATXPNKWIEKNE*IHRIKTFI 301
           HV  V+  P   IE  + IHR  TFI
Sbjct: 351 HVFIVSDIPKLSIESKDLIHRFITFI 376


>SPBP4H10.04 |ppb1||calcineurin catalytic subunit
           Ppb1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 554

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +2

Query: 233 GYHYVLLLLIHIKFNLKALTKKYIKVFILCIYSFFSIHL 349
           G H    L  +  F L+   K  IKV+  C+ SF ++ L
Sbjct: 178 GNHECAHLTDYFTFKLECTHKYNIKVYEACLQSFNALPL 216


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,454,152
Number of Sequences: 5004
Number of extensions: 25838
Number of successful extensions: 46
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)