Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0250 + 27876358-27879261                                         31   0.34 
01_06_0889 - 32741326-32741571,32741671-32741812,32741908-327422...    29   1.4  
11_06_0223 - 21419128-21419397,21419493-21419747,21420243-214204...    27   5.5  
06_03_1245 + 28652216-28652524,28652564-28652761,28652880-286529...    27   7.2  

>01_06_0250 + 27876358-27879261
          Length = 967

 Score = 31.1 bits (67), Expect = 0.34
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -1

Query: 372 HKVATXPNKWIEKNE*IHRIKTFIYFFVSAFKLNLIWISSKS 247
           H +    + W+E NE + R+ T I F +    L L+W S +S
Sbjct: 722 HYIPISADGWLELNEVMLRVPTLIAFALHLCLLQLVWSSRRS 763


>01_06_0889 -
           32741326-32741571,32741671-32741812,32741908-32742218,
           32742317-32742446,32742543-32742773,32742918-32742976,
           32743077-32743300,32743508-32743559
          Length = 464

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = +2

Query: 233 GYHYVLLLLIHIKFNLKALTKKYIKVFILCIYSFFSIH 346
           GY   LL   H K N  AL    I+    CI  +FS H
Sbjct: 45  GYEQNLLAFFHNKINSDALLVLLIEELDKCILGYFSFH 82


>11_06_0223 - 21419128-21419397,21419493-21419747,21420243-21420414,
            21420530-21420757,21420916-21421049,21421309-21421392,
            21421554-21421760,21421871-21422203,21422343-21422449,
            21422823-21422988,21423127-21423230,21423347-21423507,
            21423595-21424495,21424642-21424732,21424837-21425127,
            21425491-21425575,21425665-21425747,21427653-21427773,
            21427785-21428260
          Length = 1422

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +2

Query: 233  GYHYVLLLLIHIKFNLKALTKKYIKVFILCIYSFFSIHLFGXVATLCTCS 382
            G  Y +++   I ++ KA    Y   FI+  +++F+  LFG +   CT S
Sbjct: 1260 GILYTIIIYAMIGYDWKADKFFYFMFFIVASFNYFT--LFGMMLVACTPS 1307


>06_03_1245 +
           28652216-28652524,28652564-28652761,28652880-28652981,
           28653663-28653822,28654057-28654439
          Length = 383

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 260 LVVKARNDTHNYIIPNXNTFSRSLIKQSL 174
           +V + R D ++ I PN  T  RS +KQS+
Sbjct: 24  VVGQLRTDYYSTICPNLETIVRSSVKQSM 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,930,407
Number of Sequences: 37544
Number of extensions: 120965
Number of successful extensions: 159
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 684860244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)