Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)                 27   5.5  
SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)                 27   7.3  
SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)                       26   9.6  
SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.6  
SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)           26   9.6  

>SB_40271| Best HMM Match : TPR_2 (HMM E-Value=4.6e-24)
          Length = 1329

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -1

Query: 129 KQPLLGSRKYSKHLFVSGSIK 67
           KQPLLG  K S+   +SG+IK
Sbjct: 134 KQPLLGPAKKSQAALISGAIK 154


>SB_57110| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-22)
          Length = 559

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 227 NYGYHYVLLLLIHIKFNLKALTKKYIKVF 313
           NYG +Y +LL++     L  +T  Y K F
Sbjct: 336 NYGLYYFVLLMVSFVLPLIGMTLMYFKSF 364


>SB_40720| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 768

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
 Frame = +2

Query: 221 LCNYGYHYVLLLLIHIKFNLKALTKKYIK---------VFILCIYSFFSIHLFG 355
           +C  G   ++L L+ + FN+K   K+YIK         V + CI  + ++ L+G
Sbjct: 26  VCLMGSLGIVLGLVFLAFNIKYRNKRYIKLSSPNLNNVVILGCILIYSTVFLYG 79


>SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 65  HFILPETNKCLLYFLLPSNGCLTSYPH*IMLTILI 169
           H + PET + ++  +LP N C+ S  + I  T LI
Sbjct: 201 HALKPETGRVIIAVVLPFNPCVESGSNVISPTELI 235


>SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)
          Length = 562

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +3

Query: 309 FLFYVFIHFFRSIYLAXLQLYAHVH 383
           FL ++    F   Y++  QLY HVH
Sbjct: 385 FLIWLSAQCFHIFYVSTAQLYGHVH 409


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,907,695
Number of Sequences: 59808
Number of extensions: 165006
Number of successful extensions: 241
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)