Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm rece...    28   2.1  
AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl pe...    28   2.8  
AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical...    26   8.5  

>AC024882-8|AAF60931.2|  340|Caenorhabditis elegans Seven tm
           receptor protein 168 protein.
          Length = 340

 Score = 28.3 bits (60), Expect = 2.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 221 LCNYGYHYVLLLLIHIKFNLKALTKKYIKVFILCIYSFFSI 343
           +C+  ++ +L+ LI  K   K  T KY+ V+  C    +SI
Sbjct: 16  ICSLFFNIILIYLILTKSPKKMGTYKYLLVYFCCFSMLYSI 56


>AF100669-9|AAK39269.1|  605|Caenorhabditis elegans Dipeptidyl
           peptidase four (iv)family protein 7, isoform a protein.
          Length = 605

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 44  VVYNKHGHFILPETNKCLLYFLLPS 118
           +V   + HF L   NK LLYF LP+
Sbjct: 141 IVTGPNAHFKLSRNNKKLLYFALPN 165


>AL132862-33|CAB70222.3|  308|Caenorhabditis elegans Hypothetical
           protein Y73F8A.3 protein.
          Length = 308

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 227 NYGYHYVLLLLIHIKFNLKALTKKYIKVFILCIYSFFSIHLFGXVAT 367
           +YG   +  +  ++  +  +LTKKY  +++L  +  F+ + F   AT
Sbjct: 102 SYGILLIHFIYRYLVIHNSSLTKKYFYIYMLGSFITFAFYYFYWYAT 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,748,749
Number of Sequences: 27780
Number of extensions: 135408
Number of successful extensions: 276
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 274
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)