Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20158
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g21700.1 68417.m03142 hypothetical protein                          28   2.0  
At5g66980.1 68418.m08444 transcriptional factor B3 family protei...    28   2.6  
At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1) ...    27   6.0  
At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1) ...    27   6.0  
At4g24480.1 68417.m03509 serine/threonine protein kinase, putati...    27   6.0  

>At4g21700.1 68417.m03142 hypothetical protein 
          Length = 962

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 351 NKWIEKNE*IHRIKTFIYFFVSAFKLNLIWISSKS 247
           ++W+E  E + RI T I F +    L L W + K+
Sbjct: 722 DRWLEAKEIVVRIVTLIAFLLECRLLQLAWTARKT 756


>At5g66980.1 68418.m08444 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 334

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 83  TNKCLLYFLLPSNG 124
           TNKCL  F++PSNG
Sbjct: 291 TNKCLFEFIVPSNG 304


>At5g03730.2 68418.m00334 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 283 STYKKIYKGFYSMYLFIFFDPFIWXSCNFMH 375
           S Y K+  GFY M      DP+IW  C  +H
Sbjct: 222 SYYDKVPDGFYMMN---GLDPYIWTLCIDLH 249


>At5g03730.1 68418.m00333 serine/threonine protein kinase (CTR1)
           identical to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 821

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +1

Query: 283 STYKKIYKGFYSMYLFIFFDPFIWXSCNFMH 375
           S Y K+  GFY M      DP+IW  C  +H
Sbjct: 222 SYYDKVPDGFYMMN---GLDPYIWTLCIDLH 249


>At4g24480.1 68417.m03509 serine/threonine protein kinase, putative
           similar to serine/threonine-protein kinase CTR1
           [Arabidopsis thaliana] SWISS-PROT:Q05609
          Length = 963

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 295 KIYKGFYSMYLFIFFDPFIWXSCN 366
           KI  GFYS+   +  DP++W  CN
Sbjct: 296 KISDGFYSI---LGMDPYLWLMCN 316


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,005,833
Number of Sequences: 28952
Number of extensions: 114056
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)