Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20156
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    35   0.007
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    28   0.58 
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   1.3  
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M...    26   2.3  
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    25   4.1  
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    25   7.1  
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    25   7.1  
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa...    24   9.4  
SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces ...    24   9.4  

>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 34.7 bits (76), Expect = 0.007
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 249 P*SPFCPGAPGNPGLPCFP*VPGKPFSPFIVK-PGRPVGPIGPVSPFSPIRPVKP 88
           P  P  P AP  P  P     P  P +P +   P RP  P+ P +P  P RP  P
Sbjct: 512 PSVPQPPAAPVVPEAPSVHQPPAAPVAPEVPSAPQRPAAPVVPEAPSVPQRPAVP 566


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 28.3 bits (60), Expect = 0.58
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 127 SYRSYRPTRLNYKRRKRLTRNSWKTW 204
           S+R    T+ NY    RL   SW+TW
Sbjct: 314 SWREITKTKANYDNGIRLENASWRTW 339


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 165  KEKKAYQELMENMGGQDYLVLQDKKAI-KVY 254
            K+KK Y++  EN+G  D L + D + I +VY
Sbjct: 1271 KQKKYYEQYKENLGFFDSLCIGDNECITRVY 1301


>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1258

 Score = 26.2 bits (55), Expect = 2.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 390  WYYWGKRRSRREGGHWVWCT 449
            +YY G  +     GHWVW T
Sbjct: 1071 FYYDGPNKDGLASGHWVWGT 1090


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -3

Query: 354 WWPCQTFITLITLLSFF 304
           WWPC+T +  + L   F
Sbjct: 83  WWPCKTTVVCLILFLLF 99


>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 21/58 (36%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
 Frame = -3

Query: 240 PFCPGAPGNPGL-----PCFP*VPGKPFSPFIVK--PGRPVGPIGPVSPFSPIRPVKP 88
           P  PGAPG P L     P  P  PG    P +    PG P  P  P  P +   P  P
Sbjct: 506 PPIPGAPGMPNLNMSQPPMVP--PGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGAP 561


>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +2

Query: 17  GLPGLQGLQGEKGDRGSLGEKGDQGFTGRMGEKG 118
           G+ GL+ L   K + G  GE GD      + E G
Sbjct: 501 GIQGLELLAQYKAEHGEEGENGDDWDNWEVSEDG 534


>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
           Brl2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 680

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 114 KVTLVLSVLPAYQA*L*KEKKAYQELMENMGGQDYLVLQDKKAIKVYRTSGTI 272
           K  L LS+    +A   KEK  Y++ ++ +   + +VL+ KKA+     +  I
Sbjct: 364 KTELSLSLEKKLEAKKQKEK-VYKDKLDELANLETMVLEKKKAVATREAANKI 415


>SPAC26H5.11 |||spore wall assembly protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 965

 Score = 24.2 bits (50), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 343 PNLHYPDHPFVLFHLGAQVYQADPI 269
           P LHYP+H  V F  G+++ +  P+
Sbjct: 543 PKLHYPNH--VTFRDGSKMDEPTPV 565


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,741,007
Number of Sequences: 5004
Number of extensions: 33064
Number of successful extensions: 97
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)