Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20155
         (499 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    24   0.66 
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   0.66 
AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     23   1.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    21   4.7  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    21   4.7  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   6.2  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   8.1  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   8.1  

>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +3

Query: 249 QKIAPGLN--LRLSTCILTTLAQTMASLTCRPILRPYPGKGCTASPP 383
           Q I P +   ++LSTC  TTL    AS    P+ RP   K  + SPP
Sbjct: 240 QPIYPAVTATVQLSTCTRTTLKNNRAS--PYPMQRP---KSASLSPP 281


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.66
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = +3

Query: 303 LAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTP 428
           L Q       R    P   K   ASP  +PR++   +  PTP
Sbjct: 186 LQQQQNKSASRTTTSPTKVKASKASPAAAPRSVATPTGIPTP 227


>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 15/67 (22%), Positives = 29/67 (43%)
 Frame = -3

Query: 245 EVQSTHSHHPVRRWTKHRSKREVMPLFVNSEGSRSIGIDPRMPQTLGLDDGPEQTSVLTK 66
           E + T +++P    T   S+RE   L   ++G+ +      +PQ   LD+  +       
Sbjct: 366 EYKGTQTNYPSYEPTYDNSRREGKQLNPLNKGTEADSSFVTLPQLHSLDEWDDTLKEKAD 425

Query: 65  FTLHQTY 45
           F  + +Y
Sbjct: 426 FQYYVSY 432


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 246 RGPVHSLPPPSQEMDQT*KQERGNAS 169
           +GP H  PP  Q+ +Q  +Q  GN +
Sbjct: 201 QGPPHQQPPIQQQPNQG-QQPPGNTA 225


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 246 RGPVHSLPPPSQEMDQT*KQERGNAS 169
           +GP H  PP  Q+ +Q  +Q  GN +
Sbjct: 203 QGPPHQQPPIQQQPNQG-QQPPGNTA 227


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 405 LRSTTPTPRRWLRWPDSTSPEKNKFPNLCDE 497
           L S+   P    R PD  + E +K P+L D+
Sbjct: 3   LPSSASNPAVSERDPDEDNSEDSKDPHLTDQ 33


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 277 LRFNPGAIFWQRSSPL 230
           LRF+PG++F Q    L
Sbjct: 470 LRFDPGSLFVQNRGGL 485


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 20.6 bits (41), Expect = 8.1
 Identities = 6/24 (25%), Positives = 12/24 (50%)
 Frame = +2

Query: 215 LGGGSEWTGPLPENCSWVESKIID 286
           +G   +W   +PE   W + ++ D
Sbjct: 218 VGKKCDWVRNVPECADWYKGRLTD 241


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 134,428
Number of Sequences: 336
Number of extensions: 3296
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11735024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)