Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20155
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1703.03c |||armadillo repeat protein, unknown biological rol... 29 0.51
SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr 2|||M... 28 0.68
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 27 1.2
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 27 1.2
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc... 27 1.6
SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|c... 26 3.6
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz... 26 3.6
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha... 26 3.6
SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe... 25 4.8
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 25 4.8
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 25 6.3
SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|ch... 25 6.3
SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyc... 25 6.3
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 8.4
>SPBC1703.03c |||armadillo repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 664
Score = 28.7 bits (61), Expect = 0.51
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 290 YPYDAGTDNGVSYMSPNSETVPR 358
YPYDA G Y+S SE +PR
Sbjct: 602 YPYDAPVFKGSGYLSQLSEALPR 624
>SPBC18H10.19 |||human UVRAG |Schizosaccharomyces pombe|chr
2|||Manual
Length = 307
Score = 28.3 bits (60), Expect = 0.68
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 33 EWGSVGLMERELRQHGGLLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYLS 185
E+ + LM + + + + K + LW ++NS T DK + +LS
Sbjct: 55 EFQQIRLMHKRMLLRDEKIDELAKLEHLWQKQINSITQMRTKFDKTKSWLS 105
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/24 (54%), Positives = 13/24 (54%)
Frame = +3
Query: 351 YPGKGCTASPPCSPRTLVLRSTTP 422
YPGK A PP P T VL T P
Sbjct: 383 YPGKDEDAHPPPKPNTGVLNPTFP 406
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 27.5 bits (58), Expect = 1.2
Identities = 32/112 (28%), Positives = 46/112 (41%), Gaps = 2/112 (1%)
Frame = +3
Query: 117 WHPRVNSNTSAAFTVDKKRHY--LSLASMFGPSPDWVVGVSGLDLCQKIAPGLNLRLSTC 290
W PR++S +S K+H LSL + F PS V L+ Q+ AP + ST
Sbjct: 159 WGPRMSSVSSG------KQHLSSLSLHTHFNPSSSSTVSSDSLESSQQKAPSSS---STA 209
Query: 291 ILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLRW 446
+ A + S P++ P A+ T+ R TT T L W
Sbjct: 210 TPASAASEIIS-NKDPVVEPTHSASNAAN--SGSNTIRARQTTRTRSNTLPW 258
>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 393
Score = 27.1 bits (57), Expect = 1.6
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +2
Query: 251 ENCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVPRERMYRIT 379
EN + K I Y +DAG + + ++ NSE V +Y +T
Sbjct: 289 ENINATAGKTIAAYTFDAGPNAVIYFLEENSEIV-LNTLYAVT 330
>SPAP8A3.13c |||Vid 24 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 547
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Frame = -3
Query: 410 TEHEGPRGTWG*CGTSFPGVRSQNWATCKRRH 315
+ H +G W G+ FP S + + +R H
Sbjct: 13 SSHPNEQGAWADSGSGFPNPNSNDVSNSQRNH 44
>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1473
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 339 ILRPY-PGKGCTASPPCSPRTLVLRSTTPTPRRW 437
+LRP+ P K P + R VL T PR+W
Sbjct: 294 VLRPWLPSKLQEVLPTSTKRLTVLEPITSLPRKW 327
>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
alpha-glucosyltransferase Alg10|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 445
Score = 25.8 bits (54), Expect = 3.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = -3
Query: 497 LVTKIWKFIFLW*GRVWPSEPSSWSR 420
++ + +IFL+ +WPSEP++ R
Sbjct: 417 VINSVTLYIFLFRTFIWPSEPNALQR 442
>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 537
Score = 25.4 bits (53), Expect = 4.8
Identities = 18/81 (22%), Positives = 35/81 (43%)
Frame = +3
Query: 84 LLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYLSLASMFGPSPDWVVGVSGLDLCQKIAP 263
L+ ++ A + +PRVN+ T +S + GP W V + P
Sbjct: 89 LVPLMIGAPDVAYPRVNNFTFWLLPPALMLLLISALTEEGPGGGWTVYPPLSSITSHSGP 148
Query: 264 GLNLRLSTCILTTLAQTMASL 326
++L + + LT ++ T+ S+
Sbjct: 149 AIDLAILSLQLTGISSTLGSV 169
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 4.8
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 186 ERGNASFCQQ*RQQKYWN*PSDATDPGP*RWTGADLRVDEVHAPSDLLNP 37
+R +ASF ++ PS T P + D ++E PSD L+P
Sbjct: 138 QRHSASFFPSSQEPSIPENPSSLTGEKPHLYARIDSAINEPFTPSDRLSP 187
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 400 SCSVLRPRLQDDGSDGQTLPHQRK 471
S ++LRP LQ++ +LPH K
Sbjct: 508 STNILRPALQEEWKQQTSLPHIHK 531
>SPBC2G2.12 |||histidine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 538
Score = 25.0 bits (52), Expect = 6.3
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +2
Query: 218 GGGSEWTGPLPENCS 262
GGG EWTG L E S
Sbjct: 441 GGGKEWTGFLKERMS 455
>SPAC4G9.19 |||DNAJ domain protein DNAJB family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/19 (47%), Positives = 11/19 (57%)
Frame = -2
Query: 141 YWN*PSDATDPGP*RWTGA 85
+WN PS T P P W+ A
Sbjct: 112 HWNQPSHPTHPSPQNWSQA 130
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 8.4
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 302 RRKDTSR*S*IQPRSNFLAEVQSTHSHHPVRRWTKHRSKREVMPLFVNSEGSRS 141
R+K T++ S P+S Q HSH R +KH + + +E RS
Sbjct: 402 RKKQTTKVSGT-PKSKHAGSTQEWHSHTTPRSTSKHENNLNNITNSAKNEHIRS 454
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,326,678
Number of Sequences: 5004
Number of extensions: 51118
Number of successful extensions: 158
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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