Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20155
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 32 0.29
05_01_0120 - 828834-831143 32 0.29
02_03_0121 + 15468894-15468906,15469008-15469193,15474157-154746... 32 0.29
03_05_0690 + 26778567-26778804,26778950-26779024,26779995-267800... 30 1.2
06_02_0056 + 10997381-10997644 29 1.6
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338... 29 1.6
02_05_1096 + 34089572-34089880,34090405-34090470,34090723-340909... 29 1.6
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 29 2.1
12_02_0674 - 21745321-21746223,21746229-21747608 29 2.7
10_02_0136 + 5719136-5719780,5719923-5720237 28 3.6
05_06_0161 + 26078019-26078510 28 3.6
05_06_0005 + 24802843-24803101,24804086-24804333,24804417-248045... 28 3.6
03_06_0106 - 31682200-31682775 28 3.6
04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539 28 4.8
03_06_0411 + 33741903-33742163,33742990-33743168,33743342-337434... 28 4.8
03_04_0021 + 16523250-16523762 28 4.8
10_01_0002 - 34139-34234,34337-34345,34806-35048,35931-36003,361... 27 6.3
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439... 27 6.3
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 27 6.3
02_01_0137 + 988442-988641,989088-989281,989369-989488,989594-98... 27 8.4
>07_03_1583 -
27898375-27898436,27898455-27898539,27898621-27898768,
27899009-27899028,27899135-27899236,27899743-27899812,
27899956-27900012,27902324-27902484,27902742-27902761,
27902997-27903069,27903077-27903169,27903456-27903496,
27903597-27903858
Length = 397
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +3
Query: 318 ASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLR 443
ASL C P+L + S P S R VL TT PRR L+
Sbjct: 5 ASLRCYPLLGSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQ 46
>05_01_0120 - 828834-831143
Length = 769
Score = 31.9 bits (69), Expect = 0.29
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
Frame = +3
Query: 336 PILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWL----RWPDSTSPEKNK 476
P L P GKG + PP P + RS PR WP+ T+P +K
Sbjct: 59 PPLTPRGGKGRSCLPPLQPLNITRRSLDEWPRAGSDDVGEWPNPTTPGASK 109
>02_03_0121 +
15468894-15468906,15469008-15469193,15474157-15474650,
15475090-15475521,15475597-15475821,15476065-15476346,
15476432-15476704,15477680-15477805,15481010-15481288,
15481313-15481588,15481670-15482113,15482200-15482397,
15482574-15482732,15482832-15483085,15483164-15483316,
15483395-15483683,15483769-15483807,15483913-15483951
Length = 1386
Score = 31.9 bits (69), Expect = 0.29
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +3
Query: 285 TCILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRS-TTPT 425
+C+L TLAQ+ S+ + P T PP S RT S TTPT
Sbjct: 68 SCLLRTLAQSSFSIAEPAAVATEPAAAATEPPPPSIRTAAASSPTTPT 115
>03_05_0690 +
26778567-26778804,26778950-26779024,26779995-26780099,
26780869-26781000,26781432-26781571,26782213-26782323,
26782690-26782812,26784166-26784267,26784536-26784546,
26784878-26785103,26785363-26785401,26785413-26785583,
26785674-26785753,26785976-26786039
Length = 538
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 384 MGVMRYILSRGTVSELGDM*ETPLSVPAS*GYKSIIL 274
+G+ R +LS+G ++ TPL V AS G SI+L
Sbjct: 186 VGIARLLLSKGASVDVSSSEGTPLHVAASNGKSSIVL 222
>06_02_0056 + 10997381-10997644
Length = 87
Score = 29.5 bits (63), Expect = 1.6
Identities = 12/19 (63%), Positives = 15/19 (78%)
Frame = +3
Query: 369 TASPPCSPRTLVLRSTTPT 425
TA PPCS R L+L+ +TPT
Sbjct: 3 TALPPCSLRLLLLQDSTPT 21
>03_06_0513 -
34432798-34433043,34433272-34433436,34433557-34433842,
34434972-34435054,34435388-34435495,34435687-34435944,
34436388-34436555,34436865-34437090,34437923-34438035,
34438180-34438548,34439475-34439516,34439576-34439686,
34439883-34440086
Length = 792
Score = 29.5 bits (63), Expect = 1.6
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = -1
Query: 487 RFGNLFFSGEVESGHRSHRLGVGVVERSTRVLGEHGG 377
RF + F +GE +GH + R+ VG ++ T VL +GG
Sbjct: 162 RFLDSFVAGEEIAGHDAVRMLVGCHDKLTVVLSAYGG 198
>02_05_1096 +
34089572-34089880,34090405-34090470,34090723-34090903,
34091164-34091360,34091484-34091534,34091609-34091700,
34092234-34092246,34092278-34092349,34092970-34093048,
34093092-34093174,34093568-34093711
Length = 428
Score = 29.5 bits (63), Expect = 1.6
Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Frame = +3
Query: 48 GLMERELRQHGGLLRSIV-KAQGLWHPRVNSNTSAAFTVDKKRHYLSLASMFGPSPDWVV 224
G++ ++Q R IV K + P V+S ++++ H L A D+V+
Sbjct: 232 GIVNEAVQQIAYADRIIVNKIDLVSEPEVSSLVERIRSMNRMAH-LKRAEYGKVDLDYVL 290
Query: 225 GVSGLDL--CQKIAPGLNLRLSTCILTTLAQTM 317
G+ G DL + +N+ ++T I T + TM
Sbjct: 291 GIGGFDLERIESAGMNINMTMNTIITTIITMTM 323
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/45 (35%), Positives = 19/45 (42%)
Frame = +3
Query: 294 LTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTP 428
L LA + SL R + P P T PP SP +V P P
Sbjct: 342 LGALAVPLGSLKTRRAIAPPPSPPATTHPPPSPDLMVQVPAPPAP 386
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +3
Query: 282 STCILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTP 428
STC L+T + S TC L GK +++P SP + T+ TP
Sbjct: 561 STCELSTATGKIPSTTCTSPLSTATGK-TSSTPSTSPLSTSTSKTSSTP 608
>10_02_0136 + 5719136-5719780,5719923-5720237
Length = 319
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = +3
Query: 72 QHGGLLRSIVK--AQGLWHPRVNSNTSAAFTVDKKRHYLSLASMFGPSPD 215
+ GGLL V+ + LW ++NS+++AA V +K L F P PD
Sbjct: 234 EDGGLLFLAVRDFSLNLWKHKINSDSAAAGWVLEKTIELDRLLPFEPRPD 283
>05_06_0161 + 26078019-26078510
Length = 163
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 408 RSTTPTPRRWLRWPDSTSPEKNKFPNL 488
R P +RW RWP STSP P L
Sbjct: 5 RRCWPRAQRWCRWP-STSPHDPLLPRL 30
>05_06_0005 + 24802843-24803101,24804086-24804333,24804417-24804572,
24804956-24805114,24805862-24805929,24806044-24806433,
24806515-24806563,24806636-24806788,24807416-24807589,
24808207-24808362,24808705-24808756,24808830-24808988,
24809058-24809094,24809218-24809252,24809349-24809400,
24809614-24809663,24810590-24811924,24812688-24812825,
24812907-24812957,24813081-24814237
Length = 1625
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = -3
Query: 437 PSSWSRGRRTEHEGPRGTWG*CGTSFPGVR 348
PSSW++G + + G+W G +F G R
Sbjct: 1011 PSSWNKGDKIGGDSQNGSWSRPGGNFEGGR 1040
>03_06_0106 - 31682200-31682775
Length = 191
Score = 28.3 bits (60), Expect = 3.6
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = -3
Query: 458 GRVWPSEPSSWSRGRRTEHEG--PRGTW 381
G P+ P+S SRGR T H PR W
Sbjct: 101 GNKGPAPPTSTSRGRATSHSSAPPRSCW 128
>04_03_0752 + 19300584-19301273,19301335-19301723,19302861-19303539
Length = 585
Score = 27.9 bits (59), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 240 PVHSLPPPSQEMDQT*KQERGNAS 169
PVH++PPP Q+ Q + + G A+
Sbjct: 547 PVHAVPPPPQQQQQPEEGQAGGAA 570
>03_06_0411 +
33741903-33742163,33742990-33743168,33743342-33743426,
33743506-33743822,33743983-33744106,33744810-33744902,
33745296-33745364,33745654-33745704,33745705-33745854,
33745904-33746125,33746413-33746568,33746716-33746823,
33746992-33747126,33747209-33747364,33747544-33747664,
33748182-33748267
Length = 770
Score = 27.9 bits (59), Expect = 4.8
Identities = 22/66 (33%), Positives = 32/66 (48%)
Frame = -2
Query: 381 GVMRYILSRGTVSELGDM*ETPLSVPAS*GYKSIILDSTQEQFSGRGPVHSLPPPSQEMD 202
G +YIL++ + DM T L V +SI+ D+ QEQ + P PPP Q+ D
Sbjct: 373 GREKYILNK---VKTFDMCATFLQVELVILPRSILSDNPQEQQDQQPPPPPPPPPPQDQD 429
Query: 201 QT*KQE 184
Q+
Sbjct: 430 SQEDQD 435
>03_04_0021 + 16523250-16523762
Length = 170
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/26 (53%), Positives = 17/26 (65%)
Frame = +3
Query: 357 GKGCTASPPCSPRTLVLRSTTPTPRR 434
G G +SPP PR +V RST +PRR
Sbjct: 113 GSGGASSPPPPPRRVV-RSTPSSPRR 137
>10_01_0002 -
34139-34234,34337-34345,34806-35048,35931-36003,
36184-36265,36398-36580,36663-36702,36814-36886,
37022-37290
Length = 355
Score = 27.5 bits (58), Expect = 6.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Frame = +3
Query: 228 VSGLDLCQKIAP-GLNLRLSTC-ILTTLAQTMASLT-CRPILRPYPGKGCTASPPCSPRT 398
VS L + + IA N R + C ++ +A+T A L L P K T PP P
Sbjct: 273 VSNLQVAELIACIASNRRTAYCKVVEAIAETTAPLLPTEDQLANIPSKRLTQQPPPEPEV 332
Query: 399 LVLRSTTPTP 428
+ T P P
Sbjct: 333 VQQGETPPKP 342
>07_03_0669 -
20542481-20542489,20543212-20543872,20543899-20543983,
20545311-20546625
Length = 689
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 481 GNLFFSGEVESGHRSHRLGVGVVERSTRVLGEHGGDAVHPF 359
G F +G+ GH ++R V R +G G +HP+
Sbjct: 160 GRTFVAGDSAGGHIAYRTAVRAASREGGDIGIEGLIIIHPY 200
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 358 GKDVPHHPHVPRGPSCSVLRPRLQDDGSD 444
GKD+ HH H RG + S+ R L ++G +
Sbjct: 413 GKDIAHHAH--RGSALSMRRRSLLEEGGE 439
>02_01_0137 +
988442-988641,989088-989281,989369-989488,989594-989673,
990244-990510,990840-992458,992571-993327,993560-995506
Length = 1727
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 348 PYPGKGCTASPPCSPRTLVLRSTTPT 425
PYPGKG +A+ +P S+TP+
Sbjct: 289 PYPGKGSSAAACTNPEESSASSSTPS 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,844
Number of Sequences: 37544
Number of extensions: 417071
Number of successful extensions: 1482
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1482
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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