Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20155
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)               71   7e-13
SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)                      29   2.8  
SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)                28   3.7  
SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18)               28   3.7  
SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)                   28   4.9  
SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)                  28   4.9  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  28   4.9  
SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)                   27   6.5  
SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)                     27   6.5  
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)            27   8.6  
SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.6  
SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)                      27   8.6  
SB_53238| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)              27   8.6  

>SB_2062| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1136

 Score = 70.5 bits (165), Expect = 7e-13
 Identities = 30/71 (42%), Positives = 45/71 (63%)
 Frame = +2

Query: 254  NCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVPRERMYRITPMFPEDPRAPFYDPDSKT 433
            NC+W   + IDL P+DAGTD+G+++ SPN+ + P++ + RIT    + PRA FY   +  
Sbjct: 791  NCTWKHEETIDLIPWDAGTDDGITFKSPNARSTPKQPISRITTRLHDHPRASFYLNTNDQ 850

Query: 434  MAPMARLYLTR 466
            + P A L L R
Sbjct: 851  IRPFASLKLER 861



 Score = 64.9 bits (151), Expect = 4e-11
 Identities = 32/82 (39%), Positives = 47/82 (57%)
 Frame = +3

Query: 3   LASDGFRSLAEWGSVGLMERELRQHGGLLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYL 182
           +AS   + ++EWG+   ++ E+R     + SI++   LW+    S  SA F VD  RH L
Sbjct: 709 IASRAVQMMSEWGATEYLDEEMRNQQENVMSIIQTPSLWYGVGES--SAVFRVDSTRHLL 766

Query: 183 SLASMFGPSPDWVVGVSGLDLC 248
           S+ S   PSPDW VGV  ++LC
Sbjct: 767 SMISRMIPSPDWNVGVDRVNLC 788


>SB_23441| Best HMM Match : IncA (HMM E-Value=2.5)
          Length = 927

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
 Frame = -2

Query: 288 KSIILDSTQEQFSGRGPVHSLPP---PSQEMDQT*KQERGN 175
           KS+++ +T+EQ S +     + P   P QE+D+T KQ+  N
Sbjct: 548 KSVLIRTTEEQGSDKKSETCVDPILLPLQELDETDKQQTSN 588


>SB_52728| Best HMM Match : Herpes_UL3 (HMM E-Value=1.7)
          Length = 398

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 369 TASPPCSPRTLVLRSTTP 422
           + +PPCSPRT + RS+ P
Sbjct: 230 STAPPCSPRTSIPRSSIP 247


>SB_29576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1202

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 287 LYPYDAGTDNGVSYMSPNSETVPRERMYRITPMFPEDPRAP 409
           L P+ AG +N  + +SP+S    R+ +   TP F   P  P
Sbjct: 285 LSPFFAGNNNSSNTISPDSGIHCRDELGGGTPAFTSPPNTP 325


>SB_24547| Best HMM Match : zf-C2H2 (HMM E-Value=1.4e-18)
          Length = 195

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = -3

Query: 236 STHSHHPVRRWTKHRSKREVMPLFVNSEGSRSIGIDPRMPQTLGLDDGPEQTSVLTK 66
           ST  H+ V  W   RS      LF + EG +S   +  MP+ L     PE+   + K
Sbjct: 33  STQEHNGVGMWNMERSS----VLFEDVEGEQSTNEEEIMPEALNDTKRPERYDFIKK 85


>SB_22531| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 579

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/74 (28%), Positives = 32/74 (43%)
 Frame = -3

Query: 374 CGTSFPGVRSQNWATCKRRHCLCQRRKDTSR*S*IQPRSNFLAEVQSTHSHHPVRRWTKH 195
           CG S P   SQ  A CK  + +C +    +        ++ +A  + THS   + R  K+
Sbjct: 100 CGKSDPVEESQGTAPCKELYAVCTQASGQA--------ADLIASSKGTHS--KIERSLKY 149

Query: 194 RSKREVMPLFVNSE 153
             +REV    V  E
Sbjct: 150 AREREVTIATVTKE 163


>SB_19890| Best HMM Match : Drf_FH1 (HMM E-Value=2.4)
          Length = 169

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = +3

Query: 333 RPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLRWPDSTSPEKNK 476
           +P++ P      +  PP  P+  V R   P P++     D+TSP++N+
Sbjct: 32  KPLILP-KSSTISTKPPIKPKPAVRRVPPPAPKK--APEDATSPKRNE 76


>SB_8710| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 1627

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)
 Frame = +3

Query: 282 STCILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLV----LRSTTPTPRRWLRWP 449
           +TC+        ++   R    P P    T +PP + R       L + TPT R+W  W 
Sbjct: 357 ATCVGPNCTMANSTSAVRYPAGPKPTDPPTTAPPTTKRPTNPPRNLTTETPTTRQWQTWL 416

Query: 450 DSTSPEKNK 476
               P   +
Sbjct: 417 TGKKPNNKR 425


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -3

Query: 464 W*GRVWPSEPSSWSRGRRTE 405
           W G  W SEP  WS GR  E
Sbjct: 533 WKGPEWLSEPGCWSEGRVLE 552


>SB_39340| Best HMM Match : DUF1656 (HMM E-Value=2.9)
          Length = 225

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +3

Query: 174 HYLSLASMFGPSPDWVVGVSGLDLCQKIAPGLNLRLSTCILTTLAQTMASLTC 332
           +Y++LAS+   +    + ++ + +C    P + L L TC+      T+AS+TC
Sbjct: 17  YYITLASVTCVTGLLYIALASV-ICVTDVPHITLALVTCVTGVPYITLASVTC 68


>SB_33564| Best HMM Match : RVT_1 (HMM E-Value=0.1)
          Length = 2075

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 251 ENCSWVESKIIDLYPYDA--GTDNGVSYMSPNSETVPRERMYRITPMFPEDP 400
           E  +  ++  I  +P DA    D+G S+   N +  P+E     T   P DP
Sbjct: 569 EKLATCQTAPIPSFPEDALKDKDSGWSFSDGNQQNAPKEPSQEQTSQLPSDP 620


>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5659

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
 Frame = +3

Query: 297  TTLAQTMA-SLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLRWPDSTSPE 467
            TT+  T+A   T  P+    PG   T     +P T VL  TT  P   +    + +PE
Sbjct: 3089 TTVMTTVAPDSTVAPVTTFAPGTTVTPESTVAPETTVLPETTDAPETTVPPETTDAPE 3146


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 408  RSTTPTPRRWLRWPDSTSPEKNKFP 482
            R    + +RW ++ +S  PEK KFP
Sbjct: 4134 RDIEGSAKRWKKFAESECPEKEKFP 4158


>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
          Length = 1850

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 371  RITPMFPEDPRAPFYDPDSKTMAPM 445
            R++P FP + R P  DP  + ++P+
Sbjct: 1522 RVSPPFPAERRTPTPDPGERRVSPL 1546


>SB_4468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1513

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = -2

Query: 348 VSELGDM*ETPLSVPAS*GYKSIILDSTQEQFSGRGPVHSLPPPSQEMD 202
           +S   D  +TP S P+S    ++ + S + Q     P+H    P QE +
Sbjct: 488 ISSKADTDDTPRSAPSSNSEANVDITSDRPQAQEFAPIHLTIAPVQEAE 536


>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
          Length = 697

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 10/77 (12%)
 Frame = +2

Query: 227 SEWTGPLPENCSWVE---SKIIDLYPYDAGTDNGVSYMSPNSET----VPRERMYRITPM 385
           ++W  PL  N  + E   +K+  L+       + + Y+   +      V  ER+  I P 
Sbjct: 403 AQWGPPLESNVKFTELGTNKLEHLFEDVEQESHYIIYLKAKTRIGYGPVYTERVDTIKPS 462

Query: 386 FPEDPRAPF---YDPDS 427
            P  PRAPF   Y+ DS
Sbjct: 463 APAKPRAPFVVGYETDS 479


>SB_53238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 267

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 15/59 (25%), Positives = 24/59 (40%)
 Frame = +3

Query: 42  SVGLMERELRQHGGLLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYLSLASMFGPSPDW 218
           S+GL+   L      +   +   G      N   +  FT+DK+  +    S+F P  DW
Sbjct: 172 SIGLLRNRLSAFALYVIYYLAIIGPCKEYTNLGLTIVFTLDKQHLFDRFKSVFDPKTDW 230


>SB_32762| Best HMM Match : Extensin_2 (HMM E-Value=0.062)
          Length = 830

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = -3

Query: 137 GIDPRMPQTLGLDDGPEQTSVLTKFTLH 54
           G DP + Q LG+ D   Q   LTKF L+
Sbjct: 537 GFDPSILQRLGVVDDVSQIGGLTKFNLN 564


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,353,282
Number of Sequences: 59808
Number of extensions: 439224
Number of successful extensions: 1578
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1572
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)