Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20155
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical pr...    92   2e-19
Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical pr...    31   0.35 
Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical pr...    31   0.35 
AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical...    30   1.1  
U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen prot...    28   3.3  
Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical p...    28   4.3  
Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical pr...    28   4.3  
AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical...    28   4.3  
Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical pr...    27   5.7  
Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical pr...    27   7.6  
U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin pro...    27   7.6  
Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical p...    27   10.0 
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    27   10.0 
AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical ...    27   10.0 
AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U41264-7|AAA82427.2|  819|Caenorhabditis elegans Hypothetical
           protein F10E7.4 protein.
          Length = 819

 Score = 92.3 bits (219), Expect = 2e-19
 Identities = 37/82 (45%), Positives = 56/82 (68%)
 Frame = +3

Query: 3   LASDGFRSLAEWGSVGLMERELRQHGGLLRSIVKAQGLWHPRVNSNTSAAFTVDKKRHYL 182
           +++DG + +AEWG+    E E +     +RS++K +GLW P V   T + F V+K  H++
Sbjct: 245 ISTDGMKEIAEWGNTYKAEAEAKAKASEVRSLMKVKGLWFPDVQGTTKSQFVVNKYHHFV 304

Query: 183 SLASMFGPSPDWVVGVSGLDLC 248
           SLA+MFGPSPDW VG+S ++LC
Sbjct: 305 SLATMFGPSPDWCVGLSSVNLC 326



 Score = 71.3 bits (167), Expect = 4e-13
 Identities = 33/75 (44%), Positives = 50/75 (66%)
 Frame = +2

Query: 245 LPENCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVPRERMYRITPMFPEDPRAPFYDPD 424
           LP+ C+W E +  +L P+DAGTD+G +YMSPN  T PRE ++ IT     +P +PFY+  
Sbjct: 327 LPD-CTWAEERTFELQPFDAGTDSGPTYMSPNEPTEPREPIHWITTKL--NPLSPFYNSK 383

Query: 425 SKTMAPMARLYLTRE 469
           S T+  +A++ L R+
Sbjct: 384 SDTIPTLAKVILRRK 398


>Z81086-3|CAD56586.1|  711|Caenorhabditis elegans Hypothetical
           protein F53B6.2b protein.
          Length = 711

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 264 GLNLRLSTCILTTLAQTMASLTCRPILRPYPGKGCTAS---PPCSPRTLVL 407
           G+ LRL +C+  +  +  A   C  + RP+  + C A    PPC P    L
Sbjct: 618 GVQLRLLSCVWISSGRP-AGRNCEQMRRPHSARACVADEPLPPCMPTASAL 667


>Z81086-2|CAB03121.3| 1045|Caenorhabditis elegans Hypothetical protein
            F53B6.2a protein.
          Length = 1045

 Score = 31.5 bits (68), Expect = 0.35
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = +3

Query: 264  GLNLRLSTCILTTLAQTMASLTCRPILRPYPGKGCTAS---PPCSPRTLVL 407
            G+ LRL +C+  +  +  A   C  + RP+  + C A    PPC P    L
Sbjct: 952  GVQLRLLSCVWISSGRP-AGRNCEQMRRPHSARACVADEPLPPCMPTASAL 1001


>AC024805-15|AAK39331.2|  344|Caenorhabditis elegans Hypothetical
           protein Y51H7C.13 protein.
          Length = 344

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/65 (33%), Positives = 28/65 (43%)
 Frame = +3

Query: 288 CILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLRWPDSTSPE 467
           CI  T   T  + T  P   PYP    T +PP    TL    TT  P  W    ++T+PE
Sbjct: 135 CIPPTTTTTTTTTTRPPC--PYPP--ATNTPPAPEPTLPYEYTTQPPATWPP-VENTTPE 189

Query: 468 KNKFP 482
           +   P
Sbjct: 190 QPTVP 194


>U51998-6|ABS83845.1|  825|Caenorhabditis elegans Hypothetical
           protein C12D12.1c protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/61 (29%), Positives = 28/61 (45%)
 Frame = +3

Query: 282 STCILTTLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTPRRWLRWPDSTS 461
           +T   TT+  +  + T  P L    G   T++P  +P+T    +TTPT       P +T 
Sbjct: 505 TTATPTTVGTSKQTNTISPHLSTITGSIVTSTPTMAPQTSASPTTTPT-HTTASQPTTTK 563

Query: 462 P 464
           P
Sbjct: 564 P 564


>AF040646-1|AAK31537.1|  530|Caenorhabditis elegans Collagen protein
           70 protein.
          Length = 530

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 354 PGKGCTASPPCSPRTLVLRSTTPT 425
           P    T  PPC+PRT    +TT T
Sbjct: 278 PAAQTTPQPPCTPRTTTTTTTTTT 301


>Z69634-10|CAA93457.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 21  RSLAEWG---SVGLMERELRQ-HGGLLRSIVKAQGLWHPRVNSNTSAAFTVDK 167
           +SL EW     +G  +R LR+   G+     +  G W P VN  T   FT+D+
Sbjct: 262 KSLGEWTYPYDLG-WKRNLREVFIGIFDGRTRGNGTWWPVVNGCTQFTFTIDQ 313


>Z68507-8|CAA92831.2|  431|Caenorhabditis elegans Hypothetical
           protein M18.8 protein.
          Length = 431

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = +3

Query: 21  RSLAEWG---SVGLMERELRQ-HGGLLRSIVKAQGLWHPRVNSNTSAAFTVDK 167
           +SL EW     +G  +R LR+   G+     +  G W P VN  T   FT+D+
Sbjct: 262 KSLGEWTYPYDLG-WKRNLREVFIGIFDGRTRGNGTWWPVVNGCTQFTFTIDQ 313


>AC024805-16|AAK39336.1|  448|Caenorhabditis elegans Hypothetical
           protein Y51H7C.1 protein.
          Length = 448

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 354 PGKGCTASPPCSPRTLVLRSTTPT 425
           P    T  PPC+PRT    +TT T
Sbjct: 201 PAVQTTPQPPCTPRTTTTTTTTTT 224


>Z49125-4|CAA88936.1|  644|Caenorhabditis elegans Hypothetical
           protein C47G2.4 protein.
          Length = 644

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 177 YLSLASMFGPSPDWVVGVSGLDLCQKIAPGLNLRLSTCILTTLA 308
           ++S+A  FG    +   +  LD+   +A G+N+ L  CI+   A
Sbjct: 481 HISMAKSFGIETQFTKLMGHLDVIPILAKGINIYLPICIILLCA 524


>Z81525-1|CAB04256.1|  897|Caenorhabditis elegans Hypothetical
           protein F33A8.1 protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 PCSPRTLVLRSTTPTPRRWLRWPDSTSPEKN 473
           P +P +   R T+P P+R     +S SPEK+
Sbjct: 76  PGTPNSYRSRETSPAPKRSKETRESESPEKS 106


>U19615-1|AAB51351.1|  897|Caenorhabditis elegans Nucampholin
           protein.
          Length = 897

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 381 PCSPRTLVLRSTTPTPRRWLRWPDSTSPEKN 473
           P +P +   R T+P P+R     +S SPEK+
Sbjct: 76  PGTPNSYRSRETSPAPKRSKETRESESPEKS 106


>Z75712-10|CAB00039.2|  332|Caenorhabditis elegans Hypothetical
           protein K04G2.2 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +2

Query: 35  MGFSRSDGA*TSSTRRSAPVHRQGPGSVASEGQFQYFCCLHC 160
           M      G+  SST  S P    GP SV+    F+  CCL C
Sbjct: 1   MSSGAPSGSSMSSTPGSPPPRAGGPNSVS----FKDLCCLFC 38


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 276 RLSTCILTTLAQTMASLTCRPILRPYPGKGCTASPPC 386
           R+S      L ++ +S +C    +P P + CT SPPC
Sbjct: 127 RMSVFFTHPLPESDSSGSCHQTKQP-PFQSCTNSPPC 162


>AL022288-9|CAK55188.1|  452|Caenorhabditis elegans Hypothetical
           protein ZK1025.4b protein.
          Length = 452

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 180 LSLASMFGPSPDWVVGVSGLDLCQKIAPGLNLRLSTCIL 296
           L+  ++F P P ++   S +D+C+  +PG  L  ST  L
Sbjct: 311 LTFINIFAP-PKYIFNTSLIDICETHSPGKFLHNSTTTL 348


>AL022288-8|CAA18367.2|  402|Caenorhabditis elegans Hypothetical
           protein ZK1025.4a protein.
          Length = 402

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 180 LSLASMFGPSPDWVVGVSGLDLCQKIAPGLNLRLSTCIL 296
           L+  ++F P P ++   S +D+C+  +PG  L  ST  L
Sbjct: 311 LTFINIFAP-PKYIFNTSLIDICETHSPGKFLHNSTTTL 348


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,168,740
Number of Sequences: 27780
Number of extensions: 312303
Number of successful extensions: 982
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 981
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)