Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20155
(499 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 26 0.25
DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly pro... 22 3.1
AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein. 22 4.1
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 22 4.1
U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodops... 21 5.4
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 21 5.4
AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength rhodo... 21 5.4
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 21 5.4
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 21 5.4
AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength rhodo... 21 5.4
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 21 5.4
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 21 7.1
Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein RJP... 21 9.4
AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate r... 21 9.4
AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellif... 21 9.4
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 9.4
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 25.8 bits (54), Expect = 0.25
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = +3
Query: 366 CTASPPCSPRTLVLRSTTPTPRRWLRWPDSTSPEKNK 476
C A+ P + + P RW+ P S E+NK
Sbjct: 689 CVAANPAAEVRYTAKLQVKVPPRWIVEPTDVSVERNK 725
>DQ000307-1|AAY21180.1| 423|Apis mellifera major royal jelly
protein 9 protein.
Length = 423
Score = 22.2 bits (45), Expect = 3.1
Identities = 10/25 (40%), Positives = 12/25 (48%)
Frame = +3
Query: 336 PILRPYPGKGCTASPPCSPRTLVLR 410
P+L PYP + CS T V R
Sbjct: 103 PLLEPYPNWSWAKNQNCSGITSVYR 127
>AF084556-1|AAC71015.1| 652|Apis mellifera pipsqueak protein.
Length = 652
Score = 21.8 bits (44), Expect = 4.1
Identities = 9/22 (40%), Positives = 10/22 (45%)
Frame = -1
Query: 265 PGAIFWQRSSPLTPTTQSGDGP 200
P WQR+ L T DGP
Sbjct: 440 PSTTLWQRAHRLGIDTPKKDGP 461
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 21.8 bits (44), Expect = 4.1
Identities = 9/23 (39%), Positives = 11/23 (47%)
Frame = +3
Query: 408 RSTTPTPRRWLRWPDSTSPEKNK 476
R P RW+ P S E+NK
Sbjct: 699 RLVVHVPPRWIVEPTDVSVERNK 721
>U26026-1|AAA69069.1| 377|Apis mellifera long-wavelength rhodopsin
protein.
Length = 377
Score = 21.4 bits (43), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 177 YLSLASMFGPSPDWVVGVSGLDLCQKIAPGLN 272
Y L S+FG W + + D I GL+
Sbjct: 128 YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLS 159
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 21.4 bits (43), Expect = 5.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 350 VPRERMYRITPMFPEDPRAPFYDPD 424
+PRE RIT F + F+D +
Sbjct: 404 LPREMRQRITEYFEHRYQGKFFDEE 428
>AY703752-1|AAU12748.1| 152|Apis mellifera long-wavelength
rhodopsin protein.
Length = 152
Score = 21.4 bits (43), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 177 YLSLASMFGPSPDWVVGVSGLDLCQKIAPGLN 272
Y L S+FG W + + D I GL+
Sbjct: 94 YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLS 125
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 21.4 bits (43), Expect = 5.4
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 210 PDWVVGVSGLDLCQKIAPGLNLRLSTCILTTLAQTMASLTCRPILRPYPGKGCTASP 380
P +GV LD C + LN L + M+ L C P K +A P
Sbjct: 13 PGITIGVHILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGP 69
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 21.4 bits (43), Expect = 5.4
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = +2
Query: 350 VPRERMYRITPMFPEDPRAPFYDPD 424
+PRE RIT F + F+D +
Sbjct: 372 LPREMRQRITEYFEHRYQGKFFDEE 396
>AF091732-1|AAD02869.2| 154|Apis mellifera long-wavelength
rhodopsin protein.
Length = 154
Score = 21.4 bits (43), Expect = 5.4
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = +3
Query: 177 YLSLASMFGPSPDWVVGVSGLDLCQKIAPGLN 272
Y L S+FG W + + D I GL+
Sbjct: 4 YAMLGSLFGCGSIWTMTMIAFDRYNVIVKGLS 35
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 21.4 bits (43), Expect = 5.4
Identities = 16/57 (28%), Positives = 21/57 (36%)
Frame = +3
Query: 210 PDWVVGVSGLDLCQKIAPGLNLRLSTCILTTLAQTMASLTCRPILRPYPGKGCTASP 380
P +GV LD C + LN L + M+ L C P K +A P
Sbjct: 103 PGITIGVHILDTCGRDTYALNQSLHFVRASLSNLDMSVLECADRSAPRVKKTASAGP 159
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 21.0 bits (42), Expect = 7.1
Identities = 7/13 (53%), Positives = 7/13 (53%)
Frame = +1
Query: 373 HHPHVPRGPSCSV 411
HHPH P P V
Sbjct: 465 HHPHPPETPGPQV 477
>Z26318-1|CAA81227.1| 544|Apis mellifera royal jelly protein
RJP57-1 protein.
Length = 544
Score = 20.6 bits (41), Expect = 9.4
Identities = 8/18 (44%), Positives = 9/18 (50%)
Frame = +3
Query: 336 PILRPYPGKGCTASPPCS 389
P+LRPYP CS
Sbjct: 108 PLLRPYPDWSFAKYEDCS 125
>AY331183-1|AAP94623.1| 953|Apis mellifera NMDA-type glutamate
receptor 1 protein.
Length = 953
Score = 20.6 bits (41), Expect = 9.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +2
Query: 194 YVWSIS*LGGGSEWTGPLPE 253
Y+ + +GG EWTG + E
Sbjct: 491 YIIKNNSVGGKKEWTGLIGE 510
>AJ968562-1|CAI91546.1| 998|Apis mellifera protein ( Apis mellifera
ORF for hypotheticalprotein. ).
Length = 998
Score = 20.6 bits (41), Expect = 9.4
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 399 LVLRSTTPTPRRWLRW 446
L L+ST TPR L W
Sbjct: 120 LFLKSTEVTPRDGLGW 135
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 20.6 bits (41), Expect = 9.4
Identities = 8/27 (29%), Positives = 13/27 (48%)
Frame = +2
Query: 335 PNSETVPRERMYRITPMFPEDPRAPFY 415
P+++ VP+ + P P P P Y
Sbjct: 768 PSAQNVPQNTNSQAIPRIPILPMIPVY 794
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,851
Number of Sequences: 438
Number of extensions: 4064
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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