Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20155
         (499 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g47840.1 68415.m05971 tic20 protein-related similar to Tic20 ...    29   1.7  
At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein ...    28   4.0  
At5g11990.1 68418.m01402 proline-rich family protein contains pr...    28   4.0  
At2g25440.1 68415.m03047 leucine-rich repeat family protein cont...    28   4.0  
At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identica...    27   5.3  
At4g29380.1 68417.m04197 protein kinase family protein / WD-40 r...    27   5.3  
At4g14490.1 68417.m02234 forkhead-associated domain-containing p...    27   5.3  
At2g33080.1 68415.m04056 leucine-rich repeat family protein cont...    27   7.0  
At2g33020.1 68415.m04047 leucine-rich repeat family protein cont...    27   7.0  
At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger) fa...    27   9.3  

>At2g47840.1 68415.m05971 tic20 protein-related similar to Tic20
           (GI:3769673) [Pisum sativum]
          Length = 208

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +3

Query: 300 TLAQTMASLTCRPILRPYPGKGCTASPPCSPRTLVL---RSTTPTP 428
           TL   +++  CRP+   +PG    +  P S R   L    S TPTP
Sbjct: 11  TLTNPLSAPRCRPLSLSFPGSSTFSIRPSSRRATALTTRASYTPTP 56


>At5g58620.1 68418.m07346 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 607

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +3

Query: 363 GCTASPPCSPRTLVLRSTTPTPRRWLRWPDSTSP 464
           G T +PP SP  +   S     + W+ WP+ T P
Sbjct: 348 GATTTPPLSPNGV--SSPIGGGKTWMNWPNITPP 379


>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +3

Query: 285 TCILTTLAQTMASLTCRPILRPYPGK-GCTASPPCSPRTLVLRSTTPTP 428
           T +LT L  +  S TC  I  P P K   + SPP SP +L L S+ P P
Sbjct: 24  TNVLTPLCISECS-TCPTICSPPPSKPSPSMSPPPSP-SLPLSSSPPPP 70


>At2g25440.1 68415.m03047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to NL0E
           [Lycopersicon esculentum] gi|4235643|gb|AAD13303
          Length = 671

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 355 GYGLRIGRHVRDAIVCASVVRIQVDNLRFNPGAIFWQRSSP 233
           GY    G+  R  + C+S+  + VDN R      FW ++ P
Sbjct: 349 GYNRLTGKLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKALP 389


>At5g10430.1 68418.m01209 arabinogalactan-protein (AGP4) identical
           to gi_3883126_gb_AAC77826
          Length = 135

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = +3

Query: 306 AQTMASLTCRPILRPYPGKGCTASPPCSPRTLVLRSTTPTP 428
           A T A  T  P + P P    TASPP      V  S+ P P
Sbjct: 63  AATPAPATTPPSVAPSPADVPTASPPAPEGPTVSPSSAPGP 103


>At4g29380.1 68417.m04197 protein kinase family protein / WD-40 repeat
            family protein contains Pfam PF00400: WD domain, G-beta
            repeat; contains Pfam PF00069: Protein kinase domain;
            contains PF02985: HEAT repeat; similar to adaptor protein
            (GI:1817584) [Homo sapiens]; similar to VPS15 protein
            (GI:6103009) [Pichia pastoris]
          Length = 1494

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 233  WTGPLPENCSWVESKIIDLYPYDAGTDNGVSYMSPNSETVPRERMYRITPMFPEDPRAPF 412
            W    P++  W ES  +DL+  DAG  N V   +   ++V  ++  +     PE  +  +
Sbjct: 825  WYSSSPQSKDW-ES--VDLFDKDAGELNSVECRAEQKQSVEGKKQIKSASKQPE-VQGKY 880

Query: 413  YDPDSKTMAP 442
             + D+K   P
Sbjct: 881  AEKDAKLRIP 890


>At4g14490.1 68417.m02234 forkhead-associated domain-containing
           protein / FHA domain-containing protein contains Pfam
           domain, PF00498: forkhead-associated (FHA) domain
          Length = 386

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 397 VLGEHGGDAVHPFPGYGLRIGRHVRDAIVCASVVRIQVDNLRFNPGAIFW 248
           V G   GDA+   PG  +R+GR VR   +      I   +LR    +  W
Sbjct: 11  VKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDSGNW 60


>At2g33080.1 68415.m04056 leucine-rich repeat family protein
           contains leucine rich-repeat domain Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.2
           [Lycopersicon pimpinellifolium] gi|1184077|gb|AAC15780
          Length = 740

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -1

Query: 379 GDAVHPFP-GYGLRIGRHVRDAIVCASVVRIQVDNLRFNPGAIFWQRSSP 233
           GD++     G+ L  G   R  + C+S+  + VDN R      FW ++ P
Sbjct: 453 GDSLQTLDIGFNLISGTLPRSLLNCSSLEFLSVDNNRIKDTFPFWLKALP 502


>At2g33020.1 68415.m04047 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611
          Length = 864

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 355 GYGLRIGRHVRDAIVCASVVRIQVDNLRFNPGAIFWQRSSP 233
           GY    G+  R  + C+S+  + VDN R      FW ++ P
Sbjct: 547 GYNRLTGKLPRSLLNCSSLRFLSVDNNRVKDTFPFWLKALP 587


>At4g01270.1 68417.m00168 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 506

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 299 RKDTSR*S*IQPRSNFLAEV-QSTHSHHPVRRWTKHRSKREVMP 171
           RKD +  S + P SN    + QS+ ++  + RW+KH  + E  P
Sbjct: 393 RKDPT--SSVSPYSNGSGNIWQSSGTNRNLGRWSKHGERNEATP 434


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,778,800
Number of Sequences: 28952
Number of extensions: 301207
Number of successful extensions: 887
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)