Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20154
(421 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 52 4e-08
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 34 0.010
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 30 0.13
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 27 0.90
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 27 1.2
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 27 1.2
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 27 1.6
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 26 2.1
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 24 8.4
SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces pombe... 24 8.4
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 52.0 bits (119), Expect = 4e-08
Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 RVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
RVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+R F
Sbjct: 50 RVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVLRYF 102
Score = 28.7 bits (61), Expect = 0.39
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 188 FAKDFLAGGISXXGSKTAVAPI 253
F DF+ GG+S SKTA API
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPI 48
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 33.9 bits (74), Expect = 0.010
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +1
Query: 256 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
R+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R F
Sbjct: 43 RMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLRAF 87
Score = 26.2 bits (55), Expect = 2.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 316 YKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
YK I A I K +G+ F+RG +N+++
Sbjct: 266 YKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 30.3 bits (65), Expect = 0.13
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 196 GLPGWXYLRRRLQDRRSTNRRVKLLLQVQH 285
G PG+ ++R LQD+R NR ++++ + H
Sbjct: 46 GTPGFIAVKRVLQDKRYKNRELQIMRAISH 75
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 27.5 bits (58), Expect = 0.90
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +1
Query: 292 KQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
+ ++A + YK + +I + GLL FW G + R
Sbjct: 232 QSLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLAR 269
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 313 RYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
+Y G VD F +I K++ +L+ + G A + R
Sbjct: 140 KYNGTVDCFTKIVKQERILALYNGFEATMWR 170
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.1 bits (57), Expect = 1.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 301 AADQRYKGIVDAFVRIPKEQGLLSFWRG 384
A Y DAF +I K +GL +F+RG
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRG 252
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 1.6
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 289 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
S I +Y G++ F + EQG++ + G A+++R
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLR 341
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.2 bits (55), Expect = 2.1
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = +1
Query: 259 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
++ LQ Q S A Y G +D F + K +G ++G N+++
Sbjct: 359 IRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLK 404
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 24.2 bits (50), Expect = 8.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +1
Query: 160 NVEPRRSGRVR*GLPGWXYLRRRLQD 237
N++P G R W YL RR+Q+
Sbjct: 145 NMDPFLKGSARWTAEHWDYLERRMQN 170
>SPBC9B6.08 |clc1||clathrin light chain|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 229
Score = 24.2 bits (50), Expect = 8.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 402 DDVGQVTTPE*KETLLLGDADEGVDDT 322
+D GQ TPE K+ LL + D + T
Sbjct: 38 EDAGQFETPEDKDALLNFENDSEAEQT 64
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,518,767
Number of Sequences: 5004
Number of extensions: 24096
Number of successful extensions: 63
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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