Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20154
(421 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.) 55 3e-08
SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 2e-05
SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.002
SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0) 38 0.004
SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014) 36 0.018
SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22) 34 0.055
SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44) 32 0.17
SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0) 32 0.17
SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13) 32 0.17
SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.68
SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0) 30 0.89
SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45) 29 1.2
SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23) 28 3.6
SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0) 27 4.8
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 6.3
SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34) 27 6.3
SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 27 8.3
SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35) 27 8.3
>SB_15870| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 54.8 bits (126), Expect = 3e-08
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 1/53 (1%)
Frame = +1
Query: 256 RVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
RVKLL+Q Q + K D YKG++D R + +G LSFWRGNLAN IR F
Sbjct: 32 RVKLLVQNQDEMLKAGRLDHPYKGVIDCTSRTYRSEGFLSFWRGNLANCIRYF 84
Score = 32.3 bits (70), Expect = 0.17
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 313 RYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
+YKG +D ++I K++G +S +G AN++R
Sbjct: 248 KYKGSIDCTIQILKKEGAMSLMKGAGANILR 278
>SB_54666| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 262
Score = 45.2 bits (102), Expect = 2e-05
Identities = 21/52 (40%), Positives = 35/52 (67%)
Frame = +1
Query: 256 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
RVK+LLQ+Q + ++KG++ ++I KE+G+L +++GN NVIR F
Sbjct: 57 RVKILLQIQ------VKNPKFKGVLPTLIQIGKEEGILGYFKGNGTNVIRIF 102
>SB_28512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 453
Score = 38.7 bits (86), Expect = 0.002
Identities = 23/50 (46%), Positives = 30/50 (60%)
Frame = +1
Query: 256 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
R+K+LLQVQ A+ GIV F + +E G+ S WRGN ANVI+
Sbjct: 159 RLKVLLQVQ------ASSTNRFGIVSGFKMMLREGGIKSLWRGNGANVIK 202
>SB_18218| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 375
Score = 37.5 bits (83), Expect = 0.004
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +1
Query: 271 LQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
L+V V Q+ + G++ F + K +G+ +FW+GN + IR F
Sbjct: 79 LEVVKVLAQVGTQEAKPGLIRTFASVYKREGIKAFWKGNGVSCIRLF 125
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 259 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 384
+K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 176 IKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 214
>SB_53794| Best HMM Match : Mito_carr (HMM E-Value=0.00014)
Length = 76
Score = 35.5 bits (78), Expect = 0.018
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +1
Query: 256 RVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 381
RVKLL+Q Q + K YKG+VD +R + +G+ SFWR
Sbjct: 33 RVKLLVQNQDEMLKAGRLSSPYKGVVDCTMRTYRAEGIGSFWR 75
>SB_49149| Best HMM Match : Mito_carr (HMM E-Value=4.7e-22)
Length = 95
Score = 33.9 bits (74), Expect = 0.055
Identities = 12/35 (34%), Positives = 25/35 (71%)
Frame = +1
Query: 298 IAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVI 402
I ++Y G+++AF RI +++G+ +F+RG + +I
Sbjct: 19 ITQKKKYTGLINAFTRIYRDEGMRTFYRGYVPTLI 53
>SB_46794| Best HMM Match : Mito_carr (HMM E-Value=1.12104e-44)
Length = 192
Score = 32.3 bits (70), Expect = 0.17
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 316 YKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
Y + +A R+ KE+G+L+ WRG + +R
Sbjct: 35 YTNVFNALYRMSKEEGVLTLWRGYIPTAVR 64
Score = 29.1 bits (62), Expect = 1.6
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 316 YKGIVDAFVRIPKEQGLLSFWRG 384
YKG +D RI + +G+ + W+G
Sbjct: 133 YKGTMDVLARIVRNEGVFALWKG 155
>SB_11756| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 274
Score = 32.3 bits (70), Expect = 0.17
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +1
Query: 259 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
VK+ LQ+Q +K+ + Y+G VD V++ + +GL ++GN +R
Sbjct: 57 VKIKLQMQTEAKR-STRSVYRGPVDCLVKLYRSRGLAGCFQGNTVTAVR 104
Score = 31.5 bits (68), Expect = 0.29
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 313 RYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
RYKG++D ++ KE+G++ F RG ++R F
Sbjct: 170 RYKGMMDCALQSYKEEGMIVFTRGIWPTLLRGF 202
>SB_4905| Best HMM Match : Mito_carr (HMM E-Value=3.3e-13)
Length = 577
Score = 32.3 bits (70), Expect = 0.17
Identities = 17/42 (40%), Positives = 26/42 (61%)
Frame = +1
Query: 259 VKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 384
+K L VQHV+K A YKG+ A I +E+G+L+ ++G
Sbjct: 445 IKTRLTVQHVNKSNA---HYKGMRHALKTILREEGILALYKG 483
>SB_23056| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 30.3 bits (65), Expect = 0.68
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 328 VDAFVRIPKEQGLLSFWRG 384
+DA ++IP+ +GL S WRG
Sbjct: 64 IDALIKIPRYEGLSSLWRG 82
>SB_51010| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 306
Score = 29.9 bits (64), Expect = 0.89
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +1
Query: 268 LLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
L++++ + +I YK + AF +I K++G L W G V R
Sbjct: 137 LVKIRFQAVKIGETIPYKNMFHAFYKIAKKEGFLGLWTGMKPTVKR 182
>SB_1246| Best HMM Match : Mito_carr (HMM E-Value=1.4013e-45)
Length = 773
Score = 29.5 bits (63), Expect = 1.2
Identities = 9/31 (29%), Positives = 20/31 (64%)
Frame = +1
Query: 313 RYKGIVDAFVRIPKEQGLLSFWRGNLANVIR 405
+Y G+ +I +++GL +++GN N++R
Sbjct: 590 KYSGVGGTLAKIYRDEGLYGYFKGNGTNIVR 620
>SB_50582| Best HMM Match : Mito_carr (HMM E-Value=2.1e-23)
Length = 1026
Score = 27.9 bits (59), Expect = 3.6
Identities = 10/43 (23%), Positives = 25/43 (58%)
Frame = +1
Query: 274 QVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVI 402
++Q+ + A++ YK +D F ++ + +G + +RG L ++
Sbjct: 940 RMQNQRAVLEAEKVYKNSIDCFFKVVRNEGPIGLYRGLLPQLL 982
>SB_36589| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 264
Score = 27.5 bits (58), Expect = 4.8
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +1
Query: 325 IVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
++ AF I + +GLL++++GN A ++R F
Sbjct: 13 VLTAFRAIYRNEGLLAYFKGNGAMMLRTF 41
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 303 RRPALQGYRRRLRPHPQ 353
RRP LQ R+R+RP PQ
Sbjct: 429 RRPGLQRDRKRMRPGPQ 445
>SB_52834| Best HMM Match : Mito_carr (HMM E-Value=6.7e-34)
Length = 302
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 307 DQRYKGIVDAFVRIPKEQGLLSFWRGNLANVI 402
+ Y GI+D +I +GL +F++G + +I
Sbjct: 242 EPNYNGIIDCAKKIYSNEGLAAFYKGAVPRMI 273
>SB_31912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 179
Score = 27.1 bits (57), Expect = 6.3
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +1
Query: 259 VKLLLQVQ---HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 384
+K +QVQ + Q+Y G+ D F I KE+G + ++G
Sbjct: 53 IKKRIQVQGFEEARQSFGRVQQYDGVKDCFRTILKEEGAMGLFKG 97
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 26.6 bits (56), Expect = 8.3
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 307 DQRYKGIVDAF--VRIPKEQGLLSFWRGNLANVIRXF 411
D RY+G +D+F +R+ K +G +F GN++ + +
Sbjct: 330 DARYRGHLDSFKRLRVLKIRGTKAFVEGNVSKATKMY 366
>SB_189| Best HMM Match : Peptidase_A17 (HMM E-Value=1.9e-35)
Length = 965
Score = 26.6 bits (56), Expect = 8.3
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = -2
Query: 219 EIPPARKSLANAPGSARFDILFXYVIFTR*ICXGGSCGTRGWGI 88
++PP R +A + + FD+ + I TR GG ++ WG+
Sbjct: 539 DLPPDRTEVAPSFTNVGFDVFGPWTIHTR-KTRGGVLNSKRWGL 581
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,221,805
Number of Sequences: 59808
Number of extensions: 208966
Number of successful extensions: 606
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 606
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 789494848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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