Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20154
         (421 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    95   2e-22
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    95   2e-22
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          21   4.3  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   7.5  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   7.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 95.5 bits (227), Expect = 2e-22
 Identities = 42/52 (80%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
           RVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGNLANVIR F
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYF 84



 Score = 48.0 bits (109), Expect = 4e-08
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 161 MSNLADPGAFAKDFLAGGISXXGSKTAVAPI 253
           MS LADP AFAKDFLAGG++   SKT VAPI
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPI 31


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 95.5 bits (227), Expect = 2e-22
 Identities = 42/52 (80%), Positives = 48/52 (92%)
 Frame = +1

Query: 256 RVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNLANVIRXF 411
           RVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGNLANVIR F
Sbjct: 33  RVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYF 84



 Score = 48.0 bits (109), Expect = 4e-08
 Identities = 23/31 (74%), Positives = 25/31 (80%)
 Frame = +2

Query: 161 MSNLADPGAFAKDFLAGGISXXGSKTAVAPI 253
           MS LADP AFAKDFLAGG++   SKT VAPI
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAAISKTTVAPI 31


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 86  VIPHPRVPQLPPXHIHLVKIT 148
           +I  P   +LPP H H   +T
Sbjct: 92  IITIPPTRKLPPLHPHTAMVT 112


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 361 PAPWGCGRRRRR 326
           P P GC RRR R
Sbjct: 1   PGPNGCPRRRGR 12


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 208 WXYLRRRLQDRRSTNRRVK 264
           W +L + LQDR    R +K
Sbjct: 461 WEFLLKLLQDREYCPRYIK 479


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 283 HVSKQIAADQRYKGIVDAFVRIPK 354
           ++ K IAA   +KG+     RIP+
Sbjct: 763 YIQKMIAAAAPFKGMETQDYRIPE 786


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,588
Number of Sequences: 438
Number of extensions: 1737
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)