Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    28   0.60 
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         25   7.4  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   9.8  

>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 28.3 bits (60), Expect = 0.60
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 117 CVVYSLILLK*SLHVSEPNNIF 182
           CVVY +I+     H S PNNIF
Sbjct: 248 CVVYQMIVGSPPFHGSNPNNIF 269


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 197 GMLYSVTTVLKYCEWNCYKAHLTS 268
           G  Y+  ++LK  E+NC+   ++S
Sbjct: 24  GQRYATFSILKLVEYNCFPGFISS 47


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +1

Query: 238 MELL*GPFNLLSALRVVL*HPVYIYXHISFLFFSLRACYLI 360
           + LL  P  L  AL +V   P+Y   H  F FF+  +C +I
Sbjct: 382 ISLLNAPIWLADALGIVTVMPLYDRFHKKFSFFT-GSCLII 421


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,641,631
Number of Sequences: 5004
Number of extensions: 29774
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)