Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    27   7.3  

>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
            31343927-31344122,31344419-31344602,31344984-31345147,
            31345454-31345981,31346530-31346630,31347619-31347634,
            31347834-31347941,31348028-31348078,31349059-31349100,
            31349442-31349541,31350039-31350256,31350367-31350807,
            31350916-31351043,31351131-31351992
          Length = 1288

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 171  NNIFLFFWLVCYTALLRFLN 230
            N++ LFFWL+   + L FLN
Sbjct: 1245 NHLDLFFWLLAVLSFLNFLN 1264


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,181,380
Number of Sequences: 37544
Number of extensions: 146770
Number of successful extensions: 304
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 304
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)