Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25247| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.3  
SB_58328| Best HMM Match : MFS_1 (HMM E-Value=0.072)                   27   5.7  
SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.7  
SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.6  

>SB_25247| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 134

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = +3

Query: 90  ESGRNVGTFCVVYSLILLK*SLHVSEPNNIFLFFWLVCYTALL 218
           ++ R V  FCV+ SLI L     +++PN +F +   V Y  LL
Sbjct: 90  DNARIVTKFCVIDSLISLNRLNKIAKPNIVFDYSTEVYYPLLL 132


>SB_58328| Best HMM Match : MFS_1 (HMM E-Value=0.072)
          Length = 260

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 188 FLVGMLYSVTTVLKYCEWNCYKAHLTSCRLYG*FCNT 298
           F +  L+S+ +  +YC WN Y    T+ +    + NT
Sbjct: 42  FYILFLFSIISFAQYCAWNTYGPIATTAKTVFDWSNT 78


>SB_27872| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 975

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 188 FLVGMLYSVTTVLKYCEWNCYKAHLTSCRLYG*FCNT 298
           F +  L+S+ +  +YC WN Y    T+ +    + NT
Sbjct: 223 FYILFLFSIISFAQYCAWNTYGPIATTAKTVFDWSNT 259


>SB_10560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 721

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +3

Query: 27  QYKDIIILKYLSHLSNFLSFRESGRNVGTFCVVYS 131
           Q+ DI+  K+L++   F+   E+G+    F V+Y+
Sbjct: 571 QFYDILSAKFLNYEEKFIGLAETGKKASIF-VIYA 604


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,630,350
Number of Sequences: 59808
Number of extensions: 200704
Number of successful extensions: 399
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 945255773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)