Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50069-3|AAB37560.1|  359|Caenorhabditis elegans Hypothetical pr...    29   1.6  
AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm rece...    28   3.7  
U61944-6|ABP49529.1|  529|Caenorhabditis elegans Hypothetical pr...    27   8.6  
L16559-10|AAA27927.1|  371|Caenorhabditis elegans Hypothetical p...    27   8.6  

>U50069-3|AAB37560.1|  359|Caenorhabditis elegans Hypothetical
           protein C09B9.4 protein.
          Length = 359

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +3

Query: 3   ARDKCLLPQYK-DIIILKYLSHLSNFLSFRESGRNVGTFCVVYSLI 137
           ++ KCL P  K D  +L+ L H S F S   +GR      VV  L+
Sbjct: 59  SQSKCLRPVLKLDHAVLRALGHQSGFPSLTSAGRTENFKYVVMQLV 104


>AF022978-6|AAG24184.1|  357|Caenorhabditis elegans Seven tm
           receptor protein 196 protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 15/71 (21%), Positives = 32/71 (45%)
 Frame = +3

Query: 69  SNFLSFRESGRNVGTFCVVYSLILLK*SLHVSEPNNIFLFFWLVCYTALLRFLNIANGIV 248
           +++L F E  + +     ++S ++L   +    P  +  + WL+ YTAL   +     + 
Sbjct: 5   ADWLLFEEDIQKLCGLVAIFSNLVLMYLILTKSPLTLGAYKWLMLYTALFELVYAVFNLF 64

Query: 249 IRPI*PPVGFT 281
           + P+    G T
Sbjct: 65  VGPVIHAFGST 75


>U61944-6|ABP49529.1|  529|Caenorhabditis elegans Hypothetical
           protein T12E12.6 protein.
          Length = 529

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 191 LVGMLYSVTTVLKYCEWNCYKAHLTS 268
           +V M+YS     + C+WN Y  H  S
Sbjct: 453 VVDMVYSKPEFFELCDWNLYWCHSRS 478


>L16559-10|AAA27927.1|  371|Caenorhabditis elegans Hypothetical
           protein C06E1.11 protein.
          Length = 371

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = +1

Query: 46  YSNTCRTCQIFYRSANQVEM 105
           Y  TC TCQ  YR +  +E+
Sbjct: 346 YRTTCETCQKLYRCSKYIEI 365


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,936,405
Number of Sequences: 27780
Number of extensions: 161924
Number of successful extensions: 397
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 397
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)