Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    23   1.2  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    23   1.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   4.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.5  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  VCYLNTRISLYSNTCRTC 69
           VCYLNT + L + T  TC
Sbjct: 563 VCYLNTFLLLATPTTVTC 580


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 16  VCYLNTRISLYSNTCRTC 69
           VCYLNT + L + T  TC
Sbjct: 653 VCYLNTFLLLATPTTVTC 670


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 68  VKFFIVPRIR*KCRYILRSL 127
           V  F+V ++R  C Y+L SL
Sbjct: 64  VAVFLVRKLRRPCNYLLVSL 83


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +2

Query: 380 RPNRDKDRETERE 418
           RP +D+D E E E
Sbjct: 353 RPKKDEDEEEEEE 365


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -1

Query: 290 KTTRKADRRLNGPYNNSIRNI 228
           KT    + R++  YN S RN+
Sbjct: 457 KTLDLGENRISNFYNGSFRNL 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,988
Number of Sequences: 438
Number of extensions: 1877
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)