Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20153
         (461 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   6.2  
At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containi...    27   8.2  
At1g15630.1 68414.m01878 hypothetical protein                          27   8.2  

>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = -3

Query: 300  RVLQNYP*SRQEVKWAL*QFHSQYLRTVV 214
            RVL+ Y  SR+  +W + +  S++L+++V
Sbjct: 1051 RVLEEYKLSREAFEWVIGEIESRFLQSLV 1079


>At4g14820.1 68417.m02279 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 722

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 176 HFFIFLVGMLYSVTTVLK-YCEWNCYKAHLTSCRLY 280
           H F  LV  +Y    +++    ++CYK  L SCR Y
Sbjct: 686 HLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRDY 721


>At1g15630.1 68414.m01878 hypothetical protein
          Length = 155

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 126 YSLILLK*SLHVSEPNNIFLFFWLVCYT-ALLRFLNIANGIV 248
           + L L K   H  E N++ L  W++CYT A +  + IA G++
Sbjct: 95  FFLTLTKDEQH-PELNHVPLLIWIICYTCASIATVPIALGLI 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,001,567
Number of Sequences: 28952
Number of extensions: 136582
Number of successful extensions: 314
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 772134480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)