Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20152
         (354 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X67688-1|CAA47919.1|  623|Homo sapiens transketolase protein.          28   9.5  
U55017-1|AAA98961.1|  623|Homo sapiens transketolase protein.          28   9.5  
L12711-1|AAA61222.1|  623|Homo sapiens transketolase protein.          28   9.5  
BC009970-1|AAH09970.1|  623|Homo sapiens transketolase (Wernicke...    28   9.5  
AK223614-1|BAD97334.1|  623|Homo sapiens transketolase variant p...    28   9.5  

>X67688-1|CAA47919.1|  623|Homo sapiens transketolase protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 LRFTAQSPXSPHTPRYDXRRGHA 242
           +R+ +Q P +PH  R+   +GHA
Sbjct: 56  MRYKSQDPRNPHNDRFVLSKGHA 78


>U55017-1|AAA98961.1|  623|Homo sapiens transketolase protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 LRFTAQSPXSPHTPRYDXRRGHA 242
           +R+ +Q P +PH  R+   +GHA
Sbjct: 56  MRYKSQDPRNPHNDRFVLSKGHA 78


>L12711-1|AAA61222.1|  623|Homo sapiens transketolase protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 LRFTAQSPXSPHTPRYDXRRGHA 242
           +R+ +Q P +PH  R+   +GHA
Sbjct: 56  MRYKSQDPRNPHNDRFVLSKGHA 78


>BC009970-1|AAH09970.1|  623|Homo sapiens transketolase
           (Wernicke-Korsakoff syndrome) protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 LRFTAQSPXSPHTPRYDXRRGHA 242
           +R+ +Q P +PH  R+   +GHA
Sbjct: 56  MRYKSQDPRNPHNDRFVLSKGHA 78


>AK223614-1|BAD97334.1|  623|Homo sapiens transketolase variant
           protein.
          Length = 623

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 174 LRFTAQSPXSPHTPRYDXRRGHA 242
           +R+ +Q P +PH  R+   +GHA
Sbjct: 56  MRYKSQDPRNPHNDRFVLSKGHA 78


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.305    0.120    0.333 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,474,192
Number of Sequences: 237096
Number of extensions: 160673
Number of successful extensions: 190
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2075554296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 43 (22.0 bits)