Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20151
(356 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 29 0.16
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 0.86
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote... 25 2.6
SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 2.6
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 25 2.6
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po... 25 2.6
SPAC22F8.11 |plc1||phosphoinositide phospholipase C Plc1|Schizos... 25 2.6
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ... 25 3.5
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.5
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||... 25 4.6
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 24 6.1
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 29.5 bits (63), Expect = 0.16
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 55 MLAVSAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGS 204
++ +AG+ LS + N+D+ K+ L G Y +A ++ QGKGS
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGS 142
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 0.86
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 103 NQDLEEKLYNSILTGDYDSAVRQSLE 180
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
Mug36|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1646
Score = 25.4 bits (53), Expect = 2.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +1
Query: 40 EFAMCMLAVSAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLE 180
E A L + VVE T++QD E+++ N L + D + L+
Sbjct: 129 EDAPSQLDILDNVVEYMNKTASQDFEDEVINEGLESEIDGSSHNLLD 175
>SPAC23E2.03c |ste7||meiotic suppressor protein
Ste7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 25.4 bits (53), Expect = 2.6
Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = +2
Query: 5 SERLLTK*NSSKNLRCACSPSARASLN--YPRTLLTKTSRRNCTTASSPAT 151
SE L T + N CA SPS R+S N Y TL R N + S ++
Sbjct: 483 SESLPTAEDQVHNNHCAVSPSRRSSSNALYLATLPMGYERSNSVSYCSDSS 533
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 25.4 bits (53), Expect = 2.6
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +2
Query: 68 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAW 178
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 521
Score = 25.4 bits (53), Expect = 2.6
Identities = 15/44 (34%), Positives = 24/44 (54%)
Frame = -1
Query: 134 LLYSFSSRSWLEVSADSSTTPALTASMHIANSSRSFILLGAFQI 3
++YS++S S + SA S +L + +AN+ SF L A I
Sbjct: 465 VVYSYTSSSSMPSSAIPSFNISLISQNAVANAGNSFSPLSAMVI 508
>SPAC22F8.11 |plc1||phosphoinositide phospholipase C
Plc1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 2.6
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = -3
Query: 72 RADGEHAHRKFFEEF-HFVRSLSDR 1
+AD +H+ + FEEF HFV L R
Sbjct: 341 KADADHSGKLSFEEFQHFVSLLKTR 365
>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.0 bits (52), Expect = 3.5
Identities = 16/46 (34%), Positives = 22/46 (47%)
Frame = -1
Query: 251 FRLLSMIXLLTTFWMMEPLPWLSYSKLCRTALS*SPVRMLLYSFSS 114
F L + T+ + P P +S K S SP+R+ L SFSS
Sbjct: 121 FGYLQSSGIQNTWGLHAPKPVISIIKKSHHLFSGSPLRLDLNSFSS 166
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 25.0 bits (52), Expect = 3.5
Identities = 11/18 (61%), Positives = 15/18 (83%)
Frame = -3
Query: 156 VVVAGEDAVVQFLLEVLV 103
V+V EDAVV+F+L +LV
Sbjct: 189 VMVLPEDAVVEFVLTILV 206
>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1158
Score = 24.6 bits (51), Expect = 4.6
Identities = 13/32 (40%), Positives = 23/32 (71%)
Frame = -1
Query: 119 SSRSWLEVSADSSTTPALTASMHIANSSRSFI 24
+S S+ V +DSSTTP +++S+ + +S +FI
Sbjct: 318 TSDSFDSVLSDSSTTPTISSSVQV--NSLAFI 347
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 24.2 bits (50), Expect = 6.1
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -1
Query: 128 YSFSSRSWLEVSADSSTTPALTASMHIANSSRSFILL 18
YS S S + S T+P L+ + IAN S S L
Sbjct: 729 YSLMSSSSFPSAQSSPTSPFLSGTPSIANQSSSIASL 765
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,318,233
Number of Sequences: 5004
Number of extensions: 22443
Number of successful extensions: 63
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 107972554
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -