Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20151
         (356 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771           27   3.3  
07_01_0417 - 3183561-3184640                                           27   3.3  
07_01_0985 - 8297560-8297610,8297728-8297939,8298327-8298449,829...    27   5.7  
03_02_0915 + 12360079-12360095,12360225-12361353                       27   5.7  
01_06_1496 + 37772838-37772935,37773039-37773243,37773649-377737...    27   5.7  
12_01_1033 + 10629897-10632311,10633874-10633879                       26   7.6  
01_06_1413 + 37149038-37149295,37149392-37149603,37149687-371499...    26   7.6  

>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
          Length = 372

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = +2

Query: 65  SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAWNMRAKARA 202
           + R SL++ R +L +  R +C T +SP  +   +  +  +   +RA
Sbjct: 132 AVRDSLDHKRNVLFRRDRDDCQTLTSPQASITFNDSSLTLTGPSRA 177


>07_01_0417 - 3183561-3184640
          Length = 359

 Score = 27.5 bits (58), Expect = 3.3
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -1

Query: 158 LS*SPVRMLLYSFSSRSWLEVSADSSTTPALTAS 57
           +S SP+ + +  F+S +WL V A  S++P  TA+
Sbjct: 1   MSSSPLVLTVLLFASLTWLVVLAPRSSSPPATAT 34


>07_01_0985 -
           8297560-8297610,8297728-8297939,8298327-8298449,
           8298763-8298817,8299940-8300077,8300187-8300261,
           8300339-8300398,8301335-8301392,8301948-8302054,
           8302484-8302558,8302643-8302838,8304222-8304301,
           8308887-8309757,8310672-8310679
          Length = 702

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 288 RCRPTACSSTPCVPSLVNDXVVN 220
           RC P+   S PC P L  D +V+
Sbjct: 123 RCHPSVRYSIPCTPPLFTDLLVD 145


>03_02_0915 + 12360079-12360095,12360225-12361353
          Length = 381

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +2

Query: 47  RCACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSG 169
           RCAC   ARA    P T L +T+  N    ++ A  +  SG
Sbjct: 209 RCACGAQARAGDLIPNTTL-RTTIANLLATTTGAAASASSG 248


>01_06_1496 +
           37772838-37772935,37773039-37773243,37773649-37773742,
           37773830-37773933,37774370-37774618,37774706-37774819,
           37775010-37775093,37775292-37775462,37775544-37775657,
           37775751-37775894
          Length = 458

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 14/34 (41%), Positives = 16/34 (47%)
 Frame = +2

Query: 2   RSERLLTK*NSSKNLRCACSPSARASLNYPRTLL 103
           R E L +K N    L   CSPS      YP+ LL
Sbjct: 203 RPELLASKINEKSRLLILCSPSNPTGSVYPKELL 236


>12_01_1033 + 10629897-10632311,10633874-10633879
          Length = 806

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 107 WLEVSADSSTTPALTASMHIANSSRSFI 24
           W E   + S + + TA+ H+A++ RS+I
Sbjct: 461 WCEFGGEESDSVSTTATDHLADAIRSYI 488


>01_06_1413 +
           37149038-37149295,37149392-37149603,37149687-37149951,
           37150099-37150407
          Length = 347

 Score = 26.2 bits (55), Expect = 7.6
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -1

Query: 218 TFWMMEPLPWLSYSKLCRTALS*SP-VRMLLYSFSSRSWLEVSADSSTTPAL 66
           TFW+   +PWL Y+   +     SP V     +F+ + W E+ A+   T  L
Sbjct: 193 TFWIAHHMPWLFYAWFNQKWFRISPIVEGKPEAFTEKDW-EILAEIQRTGQL 243


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,057,912
Number of Sequences: 37544
Number of extensions: 168295
Number of successful extensions: 428
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 428
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)