Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20151
         (356 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_23517| Best HMM Match : WD40 (HMM E-Value=0)                        29   1.5  
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)                     29   1.5  
SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)          29   1.5  
SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   2.6  
SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.4  
SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)           27   5.9  
SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)            27   5.9  
SB_42798| Best HMM Match : Spb1_C (HMM E-Value=6.8)                    27   5.9  
SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   5.9  
SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)              27   5.9  

>SB_44202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 95  TLLTKTSRRNCTTASSPATTTVLSGRAWNMRAKARAP 205
           T  T T+    TT ++  TTT  +GR  ++  +AR+P
Sbjct: 39  TTTTTTTTTTTTTTTTTTTTTTTTGRGISLFYRARSP 75


>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 860

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +2

Query: 110 TSRRNCTTASSPATTTVLSG------RAWNMRAKARAP 205
           TSR NC   + P +T ++SG      R W+ R++++ P
Sbjct: 655 TSRVNCVKFNQPDSTVIISGSYDSTIRCWDCRSRSQEP 692


>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
          Length = 672

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/73 (23%), Positives = 30/73 (41%)
 Frame = -3

Query: 258 PCVPSLVNDXVVNYILDDGXXXXXLIFQALPDSTVVVAGEDAVVQFLLEVLVRSVRG*FN 79
           PC   L+N   +N  L DG     L F    +    ++G+  V+ +      R       
Sbjct: 446 PCAAGLLNRKHLNIWLSDGNTLGKLHFDPFENFLCQISGKKQVILYEPHDNTRLYEAHIQ 505

Query: 78  DARADGEHAHRKF 40
           ++  +  HAH++F
Sbjct: 506 ESMLEYNHAHKEF 518


>SB_17008| Best HMM Match : Galactosyl_T (HMM E-Value=3.6e-30)
          Length = 508

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 92  RTLLTKTSRRNCTTASSPATTTVLSGRAWNMRAKARAP 205
           + ++T+T   N   +   ATTTVL G A ++R++  AP
Sbjct: 72  KQVITRTVWDNVRRSRENATTTVLDGSATSIRSRPFAP 109


>SB_17044| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 15/31 (48%), Positives = 18/31 (58%)
 Frame = +2

Query: 77  SLNYPRTLLTKTSRRNCTTASSPATTTVLSG 169
           S N  +TLLTKTS+        PA T+V SG
Sbjct: 94  SANVLQTLLTKTSQAISAVQGPPAPTSVPSG 124


>SB_1049| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -1

Query: 116 SRSWLEVSADSSTTPALTASM 54
           + SW+E  A+  T PALTAS+
Sbjct: 242 ANSWIESDANQPTKPALTASL 262


>SB_3889| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 250

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 224 LTTFWMMEPLPWLSYSKLCRTALS*SPVRMLLYSFSSRSWLEVSA 90
           +  F  ++PL  L+YS+  RTA+   P    ++ +  R+W E  A
Sbjct: 185 VVNFEPLKPLFMLAYSR-SRTAIPAGPALPNIFGYPHRNWKEAGA 228


>SB_17140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1236

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -1

Query: 242 LSMIXLLTTFWMMEPLPWLSYSKLCRT 162
           L ++ LL  +W+++ + + SY K CR+
Sbjct: 108 LGLVGLLIVYWVVKRVYYSSYMKCCRS 134


>SB_48991| Best HMM Match : Rad52_Rad22 (HMM E-Value=5.2e-12)
          Length = 353

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 59  SPSARASLNYPRTLLTKTSRRNCTTASSPATTTV 160
           +P+A  +    RT    +S RNCTT  + +TTTV
Sbjct: 124 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 156


>SB_44316| Best HMM Match : Exo_endo_phos (HMM E-Value=0.14)
          Length = 404

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -3

Query: 300 QFPVRCRPTACSSTPCVPSLV 238
           +F  +CRP  C S  C  SLV
Sbjct: 25  EFEFKCRPEICFSDTCAESLV 45


>SB_42798| Best HMM Match : Spb1_C (HMM E-Value=6.8)
          Length = 415

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = +1

Query: 10  KAPNKMKLLEEFAMCMLAVSAGVVELSADTSNQDLEEKLYNSILTGDYDSAVR 168
           K+P K+ + + F    +A +  VVE  A+ S    E    ++ L+ D D+A R
Sbjct: 301 KSPGKVAVYKSFQNTTMATNGAVVEKRAENSMNGFENG--DATLSEDLDNANR 351


>SB_9497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 710

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +2

Query: 2   RSERLLTK*NSSKNLRCACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAW 178
           R  +L TK N   + R     S  +  N P  +   +  +  +   +P+TTT L+ R+W
Sbjct: 429 RYPKLSTKENVFSDARTGLPTSHSSQYNEPFVMKFLSKVKTFSRIRNPSTTTDLAFRSW 487


>SB_3503| Best HMM Match : Rad52_Rad22 (HMM E-Value=1e-24)
          Length = 398

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 59  SPSARASLNYPRTLLTKTSRRNCTTASSPATTTV 160
           +P+A  +    RT    +S RNCTT  + +TTTV
Sbjct: 169 APTASVTTEKSRTS-EDSSNRNCTTPINQSTTTV 201


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,294,387
Number of Sequences: 59808
Number of extensions: 187321
Number of successful extensions: 542
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 542
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 560496285
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)