Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20151
(356 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 33 0.078
Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical pr... 27 2.9
Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical pr... 27 3.9
Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical pr... 27 3.9
X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha nicot... 27 3.9
X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic acety... 27 3.9
AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and inte... 27 3.9
U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical pr... 27 5.1
Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical p... 26 8.9
Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical pr... 26 8.9
Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein. 26 8.9
U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein... 26 8.9
U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein... 26 8.9
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 32.7 bits (71), Expect = 0.078
Identities = 18/52 (34%), Positives = 26/52 (50%)
Frame = +2
Query: 50 CACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAWNMRAKARAP 205
CA + A ++LNY RT L+ +NC P TT + + A N + AP
Sbjct: 38 CATTCGACSNLNYTRTCLS-DGLKNCACVGEPTTTMLCNTIACNYPRGSEAP 88
>Z92829-4|CAD54131.1| 569|Caenorhabditis elegans Hypothetical
protein F10A3.4 protein.
Length = 569
Score = 27.5 bits (58), Expect = 2.9
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = -3
Query: 228 VVNYILDDGXXXXXL-IFQALPDSTVVVAGEDAVVQFLLEVLVRSVRG*FNDARADGEH 55
VV YI+ G + ++ A P + VVV G FLL +S+ G + GEH
Sbjct: 87 VVRYIVHTGTVLANVPLWLAAPSAQVVVTGVSGNSSFLLNYRYQSLSGFKQVIKPTGEH 145
>Z81093-1|CAB03148.2| 507|Caenorhabditis elegans Hypothetical
protein F09E8.7 protein.
Length = 507
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 108 RPRGETVQQHPHRRLRQCCPAELGI*EPRQGLHHPEC 218
RP + V Q HRRL + P+ + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>Z49936-2|CAA90181.1| 586|Caenorhabditis elegans Hypothetical
protein F13B10.1b protein.
Length = 586
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 59 SPSARASLNYPRTLLTKTSRRNCTTASSPATTTVL 163
+PS+ + ++P +L S NC++ S P++ T L
Sbjct: 47 TPSSSSITSFPYSLKLSNSNSNCSSLSRPSSLTDL 81
>X98601-1|CAA67198.1| 507|Caenorhabditis elegans non-alpha
nicotinic acetylcholinereceptor subunit protein.
Length = 507
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 108 RPRGETVQQHPHRRLRQCCPAELGI*EPRQGLHHPEC 218
RP + V Q HRRL + P+ + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>X98246-1|CAA66902.1| 507|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 507
Score = 27.1 bits (57), Expect = 3.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 108 RPRGETVQQHPHRRLRQCCPAELGI*EPRQGLHHPEC 218
RP + V Q HRRL + P+ + R G HHP C
Sbjct: 355 RPHRKNVIQRSHRRLLETGPS-VEENPMRSGEHHPLC 390
>AY834228-1|AAV91314.1| 589|Caenorhabditis elegans Toll and
interleukin 1 receptordomain protein isoform f protein.
Length = 589
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +2
Query: 59 SPSARASLNYPRTLLTKTSRRNCTTASSPATTTVL 163
+PS+ + ++P +L S NC++ S P++ T L
Sbjct: 47 TPSSSSITSFPYSLKLSNSNSNCSSLSRPSSLTDL 81
>U40413-5|AAK39175.1| 599|Caenorhabditis elegans Hypothetical
protein C18B2.6 protein.
Length = 599
Score = 26.6 bits (56), Expect = 5.1
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 50 CACSPSARASLNYPRTLLTKTSRRNC 127
C CSP+A + YP L T T +C
Sbjct: 384 CQCSPAAAQNPAYPDKLCTATQLYHC 409
>Z82265-4|CAB05174.1| 293|Caenorhabditis elegans Hypothetical
protein F02H6.6 protein.
Length = 293
Score = 25.8 bits (54), Expect = 8.9
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +2
Query: 50 CACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAWN 181
CA + A ++LNY RT L+ +NC S T +A N
Sbjct: 38 CATTCGACSNLNYTRTCLS-DGLKNCPCVGSTTITQPCGTQACN 80
>Z81575-10|CAB04640.1| 338|Caenorhabditis elegans Hypothetical
protein R08H2.13 protein.
Length = 338
Score = 25.8 bits (54), Expect = 8.9
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -1
Query: 236 MIXLLTTFWMMEPLPWLSYSKLCRTALS*SPVRMLLYSFSSRSWLEVS 93
MI LLT + L +KL R + SP+ + L F+S +W +S
Sbjct: 108 MIVLLTINFYYRYLSVTCPAKLTRFSAKNSPIWVFLILFNSSTWFVLS 155
>Z79605-7|CAB01908.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRA 175
S++ +YPR ++ S+ + +SSP+T T R+
Sbjct: 762 SSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQARS 798
>Z79604-7|CAB01901.1| 1440|Caenorhabditis elegans Hypothetical
protein ZK662.4 protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRA 175
S++ +YPR ++ S+ + +SSP+T T R+
Sbjct: 762 SSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQARS 798
>Z29967-1|CAA82854.1| 1440|Caenorhabditis elegans lin-15B protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRA 175
S++ +YPR ++ S+ + +SSP+T T R+
Sbjct: 762 SSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQARS 798
>U10413-1|AAA20089.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRA 175
S++ +YPR ++ S+ + +SSP+T T R+
Sbjct: 762 SSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQARS 798
>U10412-1|AAA20088.1| 1440|Caenorhabditis elegans lin-15B protein
protein.
Length = 1440
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 65 SARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRA 175
S++ +YPR ++ S+ + +SSP+T T R+
Sbjct: 762 SSQGPSSYPRKIVVLASKLPTSQSSSPSTATSAQARS 798
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,459,560
Number of Sequences: 27780
Number of extensions: 135806
Number of successful extensions: 462
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 482051610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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