Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20151
         (356 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    24   0.62 
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.62 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   1.4  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   4.4  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +1

Query: 16  PNKMKLLEEFAMCMLAVSAGVVELSADTSNQDLEEKLYNSILT 144
           P+ +KLL +  MC+  VS  +V  + + +      +L+N   T
Sbjct: 65  PDGLKLLSDGLMCVEKVSTTIVPTTQEINKPFKRLELFNITTT 107


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.8 bits (49), Expect = 0.62
 Identities = 19/52 (36%), Positives = 25/52 (48%)
 Frame = +2

Query: 29  NSSKNLRCACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAWNM 184
           +SS  L    SP++  S  Y     T ++  +   ASS A T VLSG   NM
Sbjct: 812 SSSDYLMVGNSPAS--SPRYLSAAATSSTSTSPRPASSTAATLVLSGCPSNM 861


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 1.4
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 13/52 (25%)
 Frame = +1

Query: 64   VSAGVVELSADTSN-----------QDLEEKLYN-SILTGDY-DSAVRQSLE 180
            V AG+ E SA TSN           +D+ E +Y+ S   G + D+ +R SLE
Sbjct: 1242 VGAGIAETSAGTSNSRGAAQMSKVPRDVSEGIYDGSGANGSFLDNLIRSSLE 1293



 Score = 22.2 bits (45), Expect = 1.9
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 62  PSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGR 172
           P+A A+   P T     +  N T A +  TTT+ + R
Sbjct: 229 PAASATGTGPATPSAVVATSNATAAMTTGTTTIPTRR 265


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 4.4
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +1

Query: 55  MLAVSAGVVELSADTSNQDLEEKLYNSILTGD 150
           M  V  G+VEL   T N+ + E L  ++  GD
Sbjct: 141 MQLVFMGIVELIMFTVNKYVGEHLLMTVDAGD 172


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,964
Number of Sequences: 438
Number of extensions: 1752
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8308335
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)