Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20151
         (356 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g69390.1 68414.m07966 chloroplast division protein, putative ...    29   0.91 
At5g32070.1 68418.m03689 hypothetical protein                          29   1.2  
At5g47050.1 68418.m05798 expressed protein                             28   2.1  
At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transfera...    27   4.9  
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r...    27   4.9  
At4g34790.1 68417.m04938 auxin-responsive family protein similar...    26   6.4  
At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing prote...    26   8.5  
At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing prote...    26   8.5  
At2g30530.1 68415.m03718 expressed protein                             26   8.5  

>At1g69390.1 68414.m07966 chloroplast division protein, putative
           (MinE1) identical to chloroplast division protein
           homolog MinE1 GI:17511220 from [Arabidopsis thaliana]
          Length = 229

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 55  MLAVSAGVVELSADTSNQDLEEKLYNSILTGDYD 156
           +LA + G  ELS   + Q++E  LYN+I  G +D
Sbjct: 70  VLARNTGDYELSPSPAEQEIESFLYNAINMGFFD 103


>At5g32070.1 68418.m03689 hypothetical protein
          Length = 339

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
 Frame = +1

Query: 28  KLLEEFAMCMLAVSAGV--VELSADTSNQDLEEKLYNSILTGDYDSAVRQS 174
           K +++F+  +LA+  G   + LSAD+ +    + L NS++T D+ ++++ S
Sbjct: 142 KEIQQFSDWLLAIGDGEERIYLSADSIDPTDSDSLANSVITPDFLNSIKLS 192


>At5g47050.1 68418.m05798 expressed protein
          Length = 300

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = +2

Query: 8   ERLLTK*NSSKNLR---CACSPSARASLNYPRTLLTKTSRRNCTTASSPATTTVLSGRAW 178
           +R+L + NS +N R        S R  L      + K +RR+     + AT      RAW
Sbjct: 129 KRMLAE-NSERNYRELLRTTEESVRRRLREKEAEIEKATRRH-VELEARATQIETEARAW 186

Query: 179 NMRAKAR 199
            MRA AR
Sbjct: 187 QMRAAAR 193


>At4g15480.1 68417.m02366 UDP-glucoronosyl/UDP-glucosyl transferase
           family protein contains Pfam profile: PF00201
           UDP-glucoronosyl and UDP-glucosyl transferase
          Length = 490

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 297 FPVRCRPTACSSTPCVPSLVNDXVVNYI 214
           FP    P      PCVP L ND + +++
Sbjct: 174 FPTETEPELDVKLPCVPVLKNDEIPSFL 201


>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
            hydrolase-related contains Pfam profiles PF00443:
            Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
            of unknown function (DUF629), PF04781: Protein of unknown
            function (DUF627)
          Length = 1568

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/49 (24%), Positives = 24/49 (48%)
 Frame = +1

Query: 58   LAVSAGVVELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGS 204
            +A+ AGV +       +   +K  N ++ G Y   + +S + +SQ  G+
Sbjct: 1099 IAIQAGVFQSDQRPGRRGRRQKASNKLVDGKYQVTLSESEDSKSQRSGT 1147


>At4g34790.1 68417.m04938 auxin-responsive family protein similar to
           auxin-induced protein X10A (SP:P33080)  [Glycine max.]
           PIR:JQ1099
          Length = 108

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 71  RASLNYPRTLLTKTSRRNCTTASSPATTTVLSG 169
           R+ L   + +    S RN   +SSP+TTT  SG
Sbjct: 5   RSMLPNAKQIFKSQSMRNKNGSSSPSTTTTTSG 37


>At4g25650.2 68417.m03694 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 559

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 29  NSSKNLRCACS-PSARASLNYPRTLLTKTSRRNCTTASSPATTT 157
           N+    RC+ S PS   S   P +L+T+ S R  T  SSP +++
Sbjct: 17  NTKPRFRCSFSNPSLPIS---PNSLITRKSSRFTTAVSSPPSSS 57


>At4g25650.1 68417.m03693 Rieske [2Fe-2S] domain-containing protein
           similar to cell death suppressor protein lls1 from Zea
           mays [gi:1935909], Rieske iron-sulfur protein Tic55 from
           Pisum sativum [gi:2764524]; contains Pfam PF00355 Rieske
           [2Fe-2S] domain
          Length = 536

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +2

Query: 29  NSSKNLRCACS-PSARASLNYPRTLLTKTSRRNCTTASSPATTT 157
           N+    RC+ S PS   S   P +L+T+ S R  T  SSP +++
Sbjct: 17  NTKPRFRCSFSNPSLPIS---PNSLITRKSSRFTTAVSSPPSSS 57


>At2g30530.1 68415.m03718 expressed protein
          Length = 371

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = +2

Query: 98  LLTKTSRRNCTTASSPATTTVLSGRAWNMRAKA 196
           ++T T+R + +++SSP+ ++  S  A ++ AKA
Sbjct: 26  MMTPTTRMSYSSSSSPSPSSASSSAASSLAAKA 58


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,051,818
Number of Sequences: 28952
Number of extensions: 124267
Number of successful extensions: 288
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 288
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 459356736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)