Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20150
(457 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 33 0.016
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 28 0.59
SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase Ran1|Schi... 26 2.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 3.1
SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subuni... 25 5.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 25 5.5
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 25 5.5
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 24 9.6
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1... 24 9.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 24 9.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 24 9.6
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 24 9.6
SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces po... 24 9.6
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 33.5 bits (73), Expect = 0.016
Identities = 27/63 (42%), Positives = 33/63 (52%)
Frame = +3
Query: 66 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 245
+PT S TP S TTA+S T PL N +T T A S+ +S NS TT +A
Sbjct: 415 LPTSSVSSTPLSSANSTTATSASST--PLSSVNSTTAT-SASSTPLSSVNS--TTATSAS 469
Query: 246 STP 254
STP
Sbjct: 470 STP 472
Score = 25.8 bits (54), Expect = 3.1
Identities = 16/38 (42%), Positives = 19/38 (50%)
Frame = +3
Query: 66 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRT 179
+PT S TP S TTA+S T PL N +T T
Sbjct: 529 LPTSSVSSTPLSSANSTTATSASST--PLTSVNSTTAT 564
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 28.3 bits (60), Expect = 0.59
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +2
Query: 86 SDSKLEDDLYNSILVADYDNAVEKSKQIYED--KKSEVITNVVNKLIRN--NKMNCMEYA 253
++ KL L N+I++ SK++ E KKS+ + N VNK+ +N N + + A
Sbjct: 139 NNGKLRTLLQNAIVLLGQQTTNVASKKLNEQDGKKSDNLRNGVNKVKQNMRNGASARDQA 198
Query: 254 SSSGCKA 274
G KA
Sbjct: 199 REQGSKA 205
>SPBC19C2.05 |ran1|pat1|serine/threonine protein kinase
Ran1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 470
Score = 26.2 bits (55), Expect = 2.4
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 63 YMPTEPQSPTPNSKTIFTTASSLPITTMP 149
YMP P +P PN+ IF + P+T +P
Sbjct: 418 YMPITP-TPYPNNAKIFGYPNQPPLTPIP 445
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 3.1
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = +2
Query: 98 LEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNN 229
LE+D + ++ + A+ SK I D+ E+I + NK I +N
Sbjct: 1623 LEEDFIHEPVIDVDEFAISSSKDIDADEDLEIIGSSDNKAIDSN 1666
>SPBP23A10.07 |rpa2||DNA-directed RNA polymerase I complex subunit
Rpa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1227
Score = 25.0 bits (52), Expect = 5.5
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +2
Query: 173 EDKKSEVITNVVNKLIRNNKMNCMEYASSSGCK 271
E ++ VI + + L+++ MNC +YA S C+
Sbjct: 1111 EMERDAVIGHGTSFLMQDRLMNCSDYAQSWVCR 1143
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 25.0 bits (52), Expect = 5.5
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = +2
Query: 71 NGTSVSDSKLEDDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCM 244
+ TS + + LE V E++KQ+ K+SE++ + NKL+ N ++ +
Sbjct: 642 DSTSKTSNLLEQLKMTEAEVDSLRKENEENKQVIALKESELVKSNDNKLLLNEQIESL 699
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 5.5
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Frame = +1
Query: 166 DLR-GQEERSHHKCRKQTHTKQQDEL 240
D+R GQEE + HT QQDEL
Sbjct: 7 DIRNGQEEDDLFSENEDNHTSQQDEL 32
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/29 (34%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +2
Query: 146 AVEKSKQIYEDKKSEVITNVVNKL-IRNN 229
A+E+ + Y ++ E +TN++N++ RNN
Sbjct: 845 ALEQIRVHYLIRRCEALTNIINRISFRNN 873
>SPBC947.11c |elg1||DNA replication factor C complex subunit
Elg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 920
Score = 24.2 bits (50), Expect = 9.6
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 355 RDGLALTLRDDSNNDGRLAYGDGKDK 432
R G A LR N GRL Y +G D+
Sbjct: 884 RRGAASILRSAGYNYGRLQYLEGSDR 909
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 176 DKKSEVITNVVNKLIRNNKMNCMEYASSSGCKAP 277
+ + + ITNV+ LI + + ++ A CK P
Sbjct: 249 EPEGDRITNVMKLLIPEDSNDSLDLAKRRSCKTP 282
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 24.2 bits (50), Expect = 9.6
Identities = 10/35 (28%), Positives = 22/35 (62%)
Frame = +3
Query: 66 MPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRS 170
+ T S P+S T+ +++SSL +++ P+ ++ S
Sbjct: 663 LSTYSSSVIPSSSTLVSSSSSLIVSSSPVASSSSS 697
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 24.2 bits (50), Expect = 9.6
Identities = 18/75 (24%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Frame = +1
Query: 202 CRKQTHTKQQDELHGVRLQLWMQGSKDIVRECFPVEFTLIFAEN-NIKLMYKRDGLALTL 378
C K HT H + + W + ++ EFTL N +L+ + A+
Sbjct: 69 CTKYIHTSANKARHVINVVRWTPDGRRLLTGSSTGEFTLWNGLTFNFELINQSHDYAVRC 128
Query: 379 RDDSNNDGRLAYGDG 423
+ S + L GDG
Sbjct: 129 AEWSTDGRWLISGDG 143
>SPCC16C4.18c |taf50||histone H4-like TAF |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 452
Score = 24.2 bits (50), Expect = 9.6
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TN 215
P PQ+PTP+ T+ AS MP ST + A++ S N
Sbjct: 137 PAIPQNPTPSDHTVGEWASKGTSGVMP----GASTAAKEARNGVTSMDN 181
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,562,016
Number of Sequences: 5004
Number of extensions: 26310
Number of successful extensions: 106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 170285640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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