Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20150
(457 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_03_0003 + 13631664-13632641 30 0.77
11_06_0232 + 21559467-21559532,21559586-21560200 29 2.3
03_02_0400 - 8135283-8135490,8136047-8136213,8136289-8136477,813... 28 4.1
11_06_0684 - 26264540-26264661,26264926-26264989,26267168-262673... 27 5.4
11_06_0460 + 23836034-23836083,23836175-23836318,23836397-238364... 27 5.4
09_06_0176 + 21351884-21352693,21352821-21352976,21353425-213536... 27 5.4
05_01_0089 + 589457-589506,589598-589741,589820-589903,590118-59... 27 5.4
11_06_0275 - 21818071-21818192,21818457-21818520,21820699-218209... 27 9.5
11_06_0202 - 21184217-21184503,21184622-21184982 27 9.5
06_01_0773 - 5784722-5784811,5784888-5784923,5785003-5785104,578... 27 9.5
>03_03_0003 + 13631664-13632641
Length = 325
Score = 30.3 bits (65), Expect = 0.77
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Frame = -2
Query: 438 LVFVL-AIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFG----ENKC-ELNREALPDDIL 277
+VFVL A A GKS + ++ IA+R V ++ V G NK E R +P +L
Sbjct: 17 VVFVLGATATGKSKLAIS-IAERFGGEVINSDKIQVHDGFPIITNKVTEEERAGVPHHLL 75
Query: 276 GALHPELEAYSMQF 235
G LHP+ + + F
Sbjct: 76 GVLHPDADFTAEDF 89
>11_06_0232 + 21559467-21559532,21559586-21560200
Length = 226
Score = 28.7 bits (61), Expect = 2.3
Identities = 17/48 (35%), Positives = 26/48 (54%)
Frame = +3
Query: 84 SPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 227
+P P ++T ASS P T P + +R R RRA+++Q +S T
Sbjct: 141 TPRPRARTRGAPASSFPGATTPQRTPDR--RGRRARAAQQGEASSRAT 186
>03_02_0400 -
8135283-8135490,8136047-8136213,8136289-8136477,
8136560-8136655,8136746-8136874,8136947-8137123,
8137256-8137366,8138592-8138792,8139022-8139186,
8139293-8139527,8139618-8139745,8139833-8139928,
8140017-8140112,8140252-8140325,8140393-8140462,
8140556-8140665,8140753-8140906,8141040-8141155,
8141259-8141379,8141464-8141641,8142331-8142489,
8142619-8142732,8142821-8143000,8143098-8143177
Length = 1117
Score = 27.9 bits (59), Expect = 4.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +1
Query: 211 QTHTKQQDELHGVRLQLWMQGSKDIVRECFPVEFTLIFAENNI 339
Q+H+ QD+ H + QGS + + PV+ TL+ N+
Sbjct: 330 QSHSYPQDDFHKNVARTLSQGSTPMSMDFHPVQQTLLLVGTNV 372
>11_06_0684 -
26264540-26264661,26264926-26264989,26267168-26267371,
26268322-26268456,26269174-26269492,26269581-26269631,
26269721-26269864,26270080-26270160,26270252-26270302,
26270392-26270535,26270750-26270833,26270912-26271055,
26271147-26271196
Length = 530
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 248
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 249 TPPALDARLQGYR 287
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>11_06_0460 +
23836034-23836083,23836175-23836318,23836397-23836480,
23836695-23836838,23836928-23836978,23837070-23837150,
23837366-23837509,23837599-23837649,23837738-23838056,
23839994-23840062,23840378-23840698,23841218-23841583,
23842241-23842304,23842569-23842690
Length = 669
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 248
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 249 TPPALDARLQGYR 287
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>09_06_0176 +
21351884-21352693,21352821-21352976,21353425-21353613,
21354741-21356354,21356446-21356553,21356649-21357509,
21357586-21357632,21358591-21358697,21359512-21359630,
21359706-21359915,21360412-21360693,21360820-21360952,
21361256-21361413,21362564-21362647,21362949-21363035
Length = 1654
Score = 27.5 bits (58), Expect = 5.4
Identities = 12/50 (24%), Positives = 28/50 (56%)
Frame = +2
Query: 116 NSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYASSSG 265
N++ + VEK++++ ++ E+++ V N+ I + ++YA S G
Sbjct: 567 NALGTTSSRDRVEKARRVALARRPEILSYVRNRSIPGDVRTVLDYADSDG 616
>05_01_0089 +
589457-589506,589598-589741,589820-589903,590118-590261,
590351-590401,590492-590641,591175-591488,592685-592815,
593131-593451,594994-595057,595322-595443
Length = 524
Score = 27.5 bits (58), Expect = 5.4
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWS 248
PT+ SPT +S + A+S ++ + K R RR+ S +S + T A
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET--NALQ 64
Query: 249 TPPALDARLQGYR 287
LD + G++
Sbjct: 65 RKRKLDEKRTGFQ 77
>11_06_0275 -
21818071-21818192,21818457-21818520,21820699-21820902,
21821852-21821986,21822704-21823022,21823111-21823161,
21823251-21823394,21823610-21823690,21823782-21823832,
21823922-21824065,21824280-21824363,21824442-21824585,
21824677-21824726
Length = 530
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 230
PT+ SPT +S + A+S ++ + K R RR+ S +S + T
Sbjct: 7 PTDDGSPTQDSSNLTARANSKELSRLARSKRKRKLDLRRSGSPSTKNYSSADET 60
>11_06_0202 - 21184217-21184503,21184622-21184982
Length = 215
Score = 26.6 bits (56), Expect = 9.5
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 69 PTEPQSPTPNSKTIFTTASSLP 134
P+ PQ+P P+S FT+ S LP
Sbjct: 159 PSLPQAPKPSSPPPFTSPSPLP 180
>06_01_0773 -
5784722-5784811,5784888-5784923,5785003-5785104,
5785154-5785213,5785988-5786068,5786069-5786113,
5786870-5786944,5787383-5787445,5787531-5787971
Length = 330
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +3
Query: 87 PTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQM 203
P PNS + +++SSLP+ P+ +N S + + SS +
Sbjct: 4 PPPNSSSSSSSSSSLPLAAAPM--SNPSAPSSSSSSSSL 40
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,180,491
Number of Sequences: 37544
Number of extensions: 172167
Number of successful extensions: 621
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 895500300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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