Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20150
         (457 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)                     30   1.0  
SB_13771| Best HMM Match : 7tm_1 (HMM E-Value=0)                       29   1.4  
SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.4  
SB_4156| Best HMM Match : Ets (HMM E-Value=0)                          29   2.4  
SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)                   28   3.2  
SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)                   28   4.2  
SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)             28   4.2  
SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)               27   5.6  
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)                 27   5.6  
SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)                  27   7.4  
SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.4  
SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)              27   7.4  
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_21609| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)             27   9.7  
SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.7  
SB_7760| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)              27   9.7  

>SB_38165| Best HMM Match : Drf_FH1 (HMM E-Value=1)
          Length = 231

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +3

Query: 51  SXRXYMPTEPQSPTPN--SKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYE 224
           S   Y PT   +PTP+  S T +T+ +S   TT      + ++ T    ++  + T SY 
Sbjct: 130 STTSYTPTTSYTPTPSYTSTTSYTSTTSYTSTTSYTSTPSYTSTTSYTSTTSYTSTTSYT 189

Query: 225 TT 230
           +T
Sbjct: 190 ST 191


>SB_13771| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 575

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/44 (29%), Positives = 24/44 (54%)
 Frame = -2

Query: 453 QLTFGLVFVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNVVFGE 322
           +LT  ++  L  AVG S + + ++ +R+ KTV     LN+   +
Sbjct: 32  KLTLYVIIFLISAVGNSLVCIVILRRRRMKTVTNYFVLNLAIAD 75


>SB_42868| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1353

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -3

Query: 371 KARPSRLYISLMLFSAKISVNSTGKHSRTISLEPCIQS 258
           KA+    +     F++ +S   T  H R++S +PC+Q+
Sbjct: 556 KAKSEGFFRHKQSFASAVSSKKTAIHHRSVSEDPCVQT 593


>SB_4156| Best HMM Match : Ets (HMM E-Value=0)
          Length = 516

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
 Frame = +3

Query: 78  PQSPTPNSKTIFTTASSL----PITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAW 245
           P S +  S T +T  SSL    P   +       S+R+     S+ S  ++Y+    T W
Sbjct: 247 PASVSTQSCTAYTPTSSLYDSRPHPVITSNPNAASSRSTDYSMSRYSNNDAYDRATPT-W 305

Query: 246 STPPALDARLQGYRPGVLP 302
           S P +   RL   + GV+P
Sbjct: 306 SAPASQTPRLSHMKDGVVP 324


>SB_52178| Best HMM Match : Drf_FH1 (HMM E-Value=2.2)
          Length = 404

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +3

Query: 72  TEPQSPTPNSKTIFTTASSLPITTMP--LKKANRSTRTRRAKSSQ 200
           T P  PTP  K   +  +++P+T +P    K  +  +T+ AK S+
Sbjct: 244 TAPPKPTPPPKPAPSLKTTIPLTDVPPLTSKEKKHEKTKTAKPSK 288


>SB_47033| Best HMM Match : WAP (HMM E-Value=1.8e-38)
          Length = 667

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +3

Query: 66  MPTEPQSPTPNSKTIFT-----TASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETT 230
           +PT  ++PTP ++ +FT     TA  +P T        + T  R   + Q+  T    TT
Sbjct: 181 LPTSKRTPTPATEPVFTTQRTPTAKQVPTTERIPTSEQKPTTKRVPTTGQIQATPEMPTT 240

Query: 231 R 233
           +
Sbjct: 241 K 241


>SB_10966| Best HMM Match : Peptidase_C48 (HMM E-Value=1.6)
          Length = 495

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 178 QEERSHHKCRKQTHTKQ-QDELHGVRLQLWMQGSKDIVR 291
           Q ER H K    T TK+ QD+L   R+  W +GS+ I R
Sbjct: 28  QWERVHGKLLPNTATKRRQDQLAFFRIIAWKRGSRWIRR 66


>SB_49364| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0089)
          Length = 828

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +1

Query: 364 LALTLRDDSNNDGRLAYGDGKD 429
           + + L DD NNDG   Y DG D
Sbjct: 691 MMIMLNDDDNNDGNGVYVDGGD 712


>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
          Length = 414

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
 Frame = +2

Query: 44  CLFXAXLYANGTSVSDSKLEDDLYNS-ILVADYDNAVEKSKQIYEDKKSE 190
           CL  +  Y  G S       D   NS   V  YD   + ++ IY DKK E
Sbjct: 175 CLTHSACYLKGDSPVPENTNDAYTNSRYAVRQYDALQQLTRIIYTDKKKE 224


>SB_43495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1994

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 75   EPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTP 254
            EP SP+    +    +S+LP T++P+  A  ST T   K++ ++ ++S +    T+   P
Sbjct: 1080 EP-SPSLTLSSSEAASSTLPPTSLPV--AQSSTSTSTVKTAAVTPSSSTQVVAPTSTIQP 1136

Query: 255  PALDARL 275
            P  ++ L
Sbjct: 1137 PVSESLL 1143


>SB_25604| Best HMM Match : DUF1634 (HMM E-Value=0.24)
          Length = 333

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
 Frame = -2

Query: 450 LTFGLVFVLAIAVGKSAIVVAVIAQRQSKTVALVHQLNV--VFGENKCELNREALPDDIL 277
           L F  +F+  +  G+  + VA       KT+   H   V  VF  N    +R A PDDI 
Sbjct: 64  LEFMQIFLAEVVKGRQDLAVAA-GIAYEKTLRKYHGWVVRGVFAMNGA--SRPASPDDID 120

Query: 276 GALHPELEAYSM 241
               P+++AY +
Sbjct: 121 ANHDPQMDAYGL 132


>SB_4416| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 503

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = +3

Query: 63  YMPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTR 176
           Y PT PQ P+   + I T     P  +   K+ NR T+
Sbjct: 91  YQPTTPQQPSLLDEPIVTPPIPSPSESSSPKRPNRKTK 128


>SB_37142| Best HMM Match : Peptidase_A22B (HMM E-Value=0)
          Length = 1019

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 63  YMPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYET 227
           YMP EP +P+P+      TA ++ I   P    + +T+   A  +    T+ ++T
Sbjct: 822 YMPAEPPAPSPS-----VTAKNMEINQSPAATTDVNTQGSSANENIQCKTSPHDT 871


>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 253

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 23/59 (38%), Positives = 29/59 (49%)
 Frame = +3

Query: 78  PQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQMS*TNSYETTR*TAWSTP 254
           P + TP  +T  TT +S P T+ P      ST T  A S+    T S  TTR  + STP
Sbjct: 82  PSTSTP--RTGSTTTTSAPSTSTP---RTGSTTTTSAPSTS---TTSNSTTRAPSTSTP 132


>SB_21609| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)
          Length = 527

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 104 DDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYASSSGC 268
           D  Y S L+    N   K+ +   + ++ +    +NKLIR N++  ++  S   C
Sbjct: 232 DPPYMSPLIKHLCNVRNKTSRFRSEAENTIRQERINKLIRMNQVMSVQNESKEHC 286


>SB_10932| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 494

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = +3

Query: 81  QSPTPNSKTIFTTASSLPIT---TMPLKKANRST 173
           QSPT N +T+F +  S  +T   T   KK N +T
Sbjct: 293 QSPTTNKRTVFLSGPSRSVTGEQTWSRKKKNMTT 326


>SB_7760| Best HMM Match : Peptidase_M23 (HMM E-Value=5.7)
          Length = 555

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/55 (25%), Positives = 26/55 (47%)
 Frame = +2

Query: 104 DDLYNSILVADYDNAVEKSKQIYEDKKSEVITNVVNKLIRNNKMNCMEYASSSGC 268
           D  Y S L+    N   K+ +   + ++ +    +NKLIR N++  ++  S   C
Sbjct: 232 DPPYMSPLIKHLCNVRNKTSRFRSEAENTIRQERINKLIRMNQVMSVQNESKEHC 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,035,689
Number of Sequences: 59808
Number of extensions: 209567
Number of successful extensions: 877
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 920703675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)