Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20150
         (457 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III do...    29   5.7  
AF225404-1|AAO27482.1|  259|Homo sapiens HERC2 protein.                29   10.0 
AF071172-1|AAD08657.1| 4834|Homo sapiens HERC2 protein.                29   10.0 

>AL590551-1|CAH71650.1|  600|Homo sapiens fibronectin type III
           domain containing 1 protein.
          Length = 600

 Score = 29.5 bits (63), Expect = 5.7
 Identities = 25/92 (27%), Positives = 35/92 (38%)
 Frame = +3

Query: 24  KPFKLFCVFSXRXYMPTEPQSPTPNSKTIFTTASSLPITTMPLKKANRSTRTRRAKSSQM 203
           KP     V     + PT    PT  +  + TT +  P T        R+T TRR  + + 
Sbjct: 138 KPLVGLEVIKKTTHPPTTTMQPTTTTTPLPTTTTPRPTTA----TTRRTTTTRRTTTRRP 193

Query: 204 S*TNSYETTR*TAWSTPPALDARLQGYRPGVL 299
             T +  TT  T  +T P     +    PG L
Sbjct: 194 --TTTVRTTTRTTTTTTPTPTTPIPTCPPGTL 223


>AF225404-1|AAO27482.1|  259|Homo sapiens HERC2 protein.
          Length = 259

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 335 LFSAKISVNSTGKHSRTISLEPCIQSW 255
           +F  K++VNS GKH   +S E  + SW
Sbjct: 212 VFIKKVAVNSGGKHCLALSSEGEVYSW 238


>AF071172-1|AAD08657.1| 4834|Homo sapiens HERC2 protein.
          Length = 4834

 Score = 28.7 bits (61), Expect = 10.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 335  LFSAKISVNSTGKHSRTISLEPCIQSW 255
            +F  K++VNS GKH   +S E  + SW
Sbjct: 4037 VFIKKVAVNSGGKHCLALSSEGEVYSW 4063


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,993,706
Number of Sequences: 237096
Number of extensions: 925776
Number of successful extensions: 3153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3153
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3815180866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)