Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20147
         (436 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos...    29   0.23 
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    26   2.2  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    26   2.2  
SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit ...    26   2.9  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   2.9  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    25   3.8  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   3.8  
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    25   5.0  
SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   5.0  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    25   6.7  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    24   8.8  
SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr 1||...    24   8.8  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    24   8.8  

>SPAC1783.04c |hst4||Sir2 family histone deacetylase
           Hst4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 29.5 bits (63), Expect = 0.23
 Identities = 28/80 (35%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
 Frame = -3

Query: 293 IVLQGLIQHFDLRRSRPILT--SWPL*S--VRTDSDSRSILRTLIIWSRIIHISWFLNTL 126
           +V+QG +Q   +RR +P+L   SW L S   +  S  +S  +T I  S  I  +  LNT 
Sbjct: 317 LVVQGDLQ-IAIRRLKPLLDAPSWKLKSHSAKRTSKQKSSEQTKITSSTKITKAIGLNTK 375

Query: 125 SNSTIGSILSTWPLHNVLIS 66
           SN +     +++ LH VL S
Sbjct: 376 SNDSSKKDNTSFQLHQVLNS 395


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +1

Query: 7   VXNMEVVKVGIKSPEVNMLLEIKTLC 84
           +  ++ +  G K P++N+   IKTLC
Sbjct: 136 IPTIKAILSGYKYPDMNVFFSIKTLC 161


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +3

Query: 24  GQSRN-QEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSP 182
           GQS N QE    Y           + +YG  + +     EP N+  S+P  QSP
Sbjct: 22  GQSYNTQEEQPAYPQRFSTSQGMYAAEYGNANMMNTSENEPNNLAHSQPFRQSP 75


>SPBC3B8.11 |rrn6||RNA polymerase I transcription factor subunit
           Rrn6 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 868

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -3

Query: 413 LDHIEFQELEFRFDHLDHIDY*DLEFHFDHLDHI 312
           + H+E  EL F F ++  I+Y +  F +  +D I
Sbjct: 653 ISHLEGTELSFYFPYMFGINYNNASFFYTSVDSI 686


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 1/79 (1%)
 Frame = +3

Query: 24  GQSRNQEPG-GQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGI 200
           GQ+ NQ    GQY   +Q +    SGQ        Q IQ   +    +P++       G+
Sbjct: 356 GQNNNQPAQPGQYNQQSQPVQSYQSGQSTQHFQPVQPIQPVQSTQYYQPSSPVQPVQNGV 415

Query: 201 GIGPNGLQGPTGQYRPGSP 257
              P      T  Y+P SP
Sbjct: 416 PAPPMQPVQSTQYYQPSSP 434


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = +1

Query: 52  VNMLLEIKTLCKGQVDSMDPIVLLDKV 132
           V MLL+I   C GQ+ S DP  L D V
Sbjct: 404 VEMLLKIVLNCGGQLRSDDPTSLQDIV 430


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 14/79 (17%)
 Frame = +3

Query: 69  NQNIMQRPSGQYGPDSAVGQGIQ-EPG-------NMYDSRPNNQSPQYGPGI---GIGPN 215
           +QN+   PS  +GP  A G GIQ +P        N   S PNN  P +G       + PN
Sbjct: 296 SQNVND-PSSIFGPTVASGFGIQNQPQQSAFQNLNTQFSLPNNSQPVFGHTSLTQPVNPN 354

Query: 216 G--LQGP-TGQYRPGSPEV 263
           G  +Q P T   +P  P V
Sbjct: 355 GFTVQPPATFMQQPQGPFV 373


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 338 FHFDHLDHIEFQNHHIVL 285
           FHFD+  H+  +N +IVL
Sbjct: 127 FHFDNSSHMVIRNENIVL 144


>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
 Frame = -2

Query: 261 PPEIQAYTDQLALVIRSDRFRFQVHIEDFDYLV*NHTYF-LVLEYLVQQHYRVHTVHLAF 85
           P +I   TD     I+S  +  + H  D   L   H +  L L+  V +   V   HL +
Sbjct: 23  PSDISKTTD--TKFIQSSPYIEKEHWLDLGTLSVGHYFLSLALQTFVPKD-SVRYAHLPY 79

Query: 84  A*CFDFQEHIDLRALDSYFDHLHI 13
           A  FD  E ++L    S+  H HI
Sbjct: 80  AQAFDIAEIVNLIREYSHKYHKHI 103


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 963

 Score = 24.6 bits (51), Expect = 6.7
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
 Frame = +3

Query: 6    GXQYGGGQSRNQEPGGQ--YAPGNQNIMQRPSGQYG 107
            G  +  G S N    G   Y   NQ+ + RP G YG
Sbjct: 926  GFPFNSGASTNAGSNGLGGYNAYNQSFINRPGGWYG 961


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 2/55 (3%)
 Frame = +3

Query: 15  YGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPD--SAVGQGIQEPGNMYDSRPNN 173
           Y GG        G   P N  +M   +G  GP     V  G   P     S  NN
Sbjct: 106 YPGGDYDALARRGNRGPANTRVMNSSAGATGPSRRRQVSSGSSTPSMTKSSANNN 160


>SPAC1B3.11c |ypt4||GTPase Ypt4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +1

Query: 157 ILDQIIKVLNMDLESESVRTDYKGQLVSIGLDLRRSKCCIRPWRT 291
           +L + +K    D  S +V  D+  +++S+G+  ++ +  ++ W T
Sbjct: 25  LLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDT 69


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 111 DSAVGQGIQEPGNMYDSRPNNQSPQYGPGIG--IGPNGLQGPTGQYRPGSP 257
           +  V   ++E   M+ + PNNQSP+          PN    P+  Y P  P
Sbjct: 234 EKIVEMDLEEEDMMHQNDPNNQSPKLLKEFRKLHEPNAEDAPSRDYIPLPP 284


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,637,519
Number of Sequences: 5004
Number of extensions: 31569
Number of successful extensions: 107
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)