Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20147
(436 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g05220.2 68416.m00570 heavy-metal-associated domain-containin... 33 0.063
At3g05220.1 68416.m00569 heavy-metal-associated domain-containin... 33 0.063
At2g22720.3 68415.m02692 expressed protein 33 0.11
At2g22720.2 68415.m02691 expressed protein 33 0.11
At2g22720.1 68415.m02693 expressed protein 33 0.11
At4g20020.2 68417.m02930 expressed protein 32 0.15
At4g20020.1 68417.m02931 expressed protein 32 0.15
At1g59910.1 68414.m06749 formin homology 2 domain-containing pro... 32 0.15
At3g50370.1 68416.m05508 expressed protein 31 0.44
At3g16510.1 68416.m02107 C2 domain-containing protein contains s... 31 0.44
At1g33680.1 68414.m04166 KH domain-containing protein similar to... 31 0.44
At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3) ... 30 0.59
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 30 0.77
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 30 0.77
At5g44780.1 68418.m05488 expressed protein low similarity to SP|... 29 1.0
At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase fa... 29 1.0
At2g37820.1 68415.m04643 DC1 domain-containing protein contains ... 29 1.0
At3g45720.1 68416.m04941 proton-dependent oligopeptide transport... 29 1.8
At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protei... 28 3.1
At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protei... 28 3.1
At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH) domain... 28 3.1
At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing ... 28 3.1
At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing ... 28 3.1
At3g02170.1 68416.m00190 expressed protein 28 3.1
At2g33845.1 68415.m04154 DNA-binding protein-related contains we... 28 3.1
At1g15830.1 68414.m01900 expressed protein 28 3.1
At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP... 27 4.1
At2g07880.1 68415.m01007 hypothetical protein 27 4.1
At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT... 27 5.5
At3g22520.1 68416.m02846 expressed protein 27 5.5
At2g30380.1 68415.m03697 expressed protein contains Pfam profile... 27 5.5
At1g62130.1 68414.m07010 AAA-type ATPase family protein contains... 27 5.5
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 27 7.2
At4g32760.1 68417.m04661 VHS domain-containing protein / GAT dom... 26 9.5
At3g62300.1 68416.m06999 agenet domain-containing protein contai... 26 9.5
At3g61040.1 68416.m06830 cytochrome P450 family protein similar ... 26 9.5
At3g45680.1 68416.m04937 proton-dependent oligopeptide transport... 26 9.5
At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3) 26 9.5
>At3g05220.2 68416.m00570 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 478
Score = 33.5 bits (73), Expect = 0.063
Identities = 24/70 (34%), Positives = 27/70 (38%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPG 197
GGG N+ A G P G GP +GQG G M P GPG
Sbjct: 305 GGGGGGNKGNHNHSAKGIGGGPMGPGGPMGPGGPMGQG----GPMGMMGPGGPMSMMGPG 360
Query: 198 IGIGPNGLQG 227
+GP G QG
Sbjct: 361 GPMGPMGGQG 370
>At3g05220.1 68416.m00569 heavy-metal-associated domain-containing
protein similar to farnesylated protein 1 (GI:23304411)
{Hordeum vulgare subsp. spontaneum}; contains Pfam
profile PF00403: Heavy-metal-associated domain
Length = 577
Score = 33.5 bits (73), Expect = 0.063
Identities = 24/70 (34%), Positives = 27/70 (38%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPG 197
GGG N+ A G P G GP +GQG G M P GPG
Sbjct: 404 GGGGGGNKGNHNHSAKGIGGGPMGPGGPMGPGGPMGQG----GPMGMMGPGGPMSMMGPG 459
Query: 198 IGIGPNGLQG 227
+GP G QG
Sbjct: 460 GPMGPMGGQG 469
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +3
Query: 21 GGQSRNQEP-GGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRP----NNQSPQ 185
G Q +N P + A + QRP+ G G Q P + RP N Q+P
Sbjct: 281 GSQMQNSRPQNSRPASAGSQMQQRPASS-GSQRPASSGSQRPASSGSQRPGSSTNRQAPM 339
Query: 186 YGPGIGIGPNG 218
PG G NG
Sbjct: 340 RPPGSGSTMNG 350
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +3
Query: 21 GGQSRNQEP-GGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRP----NNQSPQ 185
G Q +N P + A + QRP+ G G Q P + RP N Q+P
Sbjct: 384 GSQMQNSRPQNSRPASAGSQMQQRPASS-GSQRPASSGSQRPASSGSQRPGSSTNRQAPM 442
Query: 186 YGPGIGIGPNG 218
PG G NG
Sbjct: 443 RPPGSGSTMNG 453
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 32.7 bits (71), Expect = 0.11
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Frame = +3
Query: 21 GGQSRNQEP-GGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRP----NNQSPQ 185
G Q +N P + A + QRP+ G G Q P + RP N Q+P
Sbjct: 52 GSQMQNSRPQNSRPASAGSQMQQRPASS-GSQRPASSGSQRPASSGSQRPGSSTNRQAPM 110
Query: 186 YGPGIGIGPNG 218
PG G NG
Sbjct: 111 RPPGSGSTMNG 121
>At4g20020.2 68417.m02930 expressed protein
Length = 406
Score = 32.3 bits (70), Expect = 0.15
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAV-----GQGIQEPGNM---YDSRPNN 173
G G +N + QY G Q MQ G YGP GQG Q P Y+ P +
Sbjct: 210 GSGGPQNFQRNTQY--GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRS 267
Query: 174 QSPQYGPGIGIGPNGLQGPTGQYRPGSPEVK 266
P Y G G P Y+ G +V+
Sbjct: 268 PPPPYQAGYN---QGQGSPVPPYQAGYNQVQ 295
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGN-QNIMQRPSGQYGPDSAVGQGIQEPG 146
GG + +Q P G Y G +N + +G +GP S G PG
Sbjct: 312 GGSGNYSQGPQGGYNQGGPRNYNPQGAGNFGPASGAGNLGPAPG 355
>At4g20020.1 68417.m02931 expressed protein
Length = 419
Score = 32.3 bits (70), Expect = 0.15
Identities = 28/91 (30%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAV-----GQGIQEPGNM---YDSRPNN 173
G G +N + QY G Q MQ G YGP GQG Q P Y+ P +
Sbjct: 210 GSGGPQNFQRNTQY--GQQPPMQGGGGSYGPQQGYATPGQGQGTQAPPPFQGGYNQGPRS 267
Query: 174 QSPQYGPGIGIGPNGLQGPTGQYRPGSPEVK 266
P Y G G P Y+ G +V+
Sbjct: 268 PPPPYQAGYN---QGQGSPVPPYQAGYNQVQ 295
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGN-QNIMQRPSGQYGPDSAVGQGIQEPG 146
GG + +Q P G Y G +N + +G +GP S G PG
Sbjct: 312 GGSGNYSQGPQGGYNQGGPRNYNPQGAGNFGPASGAGNLGPAPG 355
>At1g59910.1 68414.m06749 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 929
Score = 32.3 bits (70), Expect = 0.15
Identities = 29/92 (31%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Frame = +3
Query: 6 GXQYGGG------QSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRP 167
G YGGG QS+ Q PGG P + + + G+ P + G GN S P
Sbjct: 204 GSDYGGGGGGKQSQSKFQAPGGGSFPSSPSQIHSGGGR-SPPLPLPPGQFTAGNA--SFP 260
Query: 168 NNQSP---QYGPGIGIGPNGLQGPTGQYRPGS 254
++ P QY G P+ P GQY G+
Sbjct: 261 SSTQPPPGQYMAGNASFPSSTPPPPGQYMAGN 292
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 30.7 bits (66), Expect = 0.44
Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 5/104 (4%)
Frame = +3
Query: 6 GXQYGG---GQSRNQEPGGQYAPGNQNIMQRPSG-QYGPDSAVGQGIQEPGNMYDSRPNN 173
G QYG GQS+ + G Y+P + + Q P G Y P +++P + + +
Sbjct: 742 GEQYGDPGWGQSQGRPRHGPYSPYPEKLYQNPEGDDYYPFGRPRYSVRQPRVLPPPQESR 801
Query: 174 QSPQYGPGI-GIGPNGLQGPTGQYRPGSPEVKMLYQALEDNMVV 302
Q + + GP+ G G +L +ED+ V+
Sbjct: 802 QKTSFRSEVEHPGPSTSIGGINYSHKGRTNSTVLANYIEDHHVL 845
>At3g16510.1 68416.m02107 C2 domain-containing protein contains
similarity to shock protein SRC2 [Glycine max]
gi|2055230|dbj|BAA19769 ; contains Pfam profile
PF00168:C2 domain
Length = 360
Score = 30.7 bits (66), Expect = 0.44
Identities = 15/45 (33%), Positives = 20/45 (44%)
Frame = +3
Query: 102 YGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGPNGLQGPTG 236
Y P ++ G G P + NN P G G+G+G L G G
Sbjct: 301 YPPPTSPGYGYGCPTTQVPPKNNNNKPGLGLGLGVGAGLLGGALG 345
>At1g33680.1 68414.m04166 KH domain-containing protein similar to
FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
sapiens]
Length = 759
Score = 30.7 bits (66), Expect = 0.44
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Frame = +3
Query: 3 PGXQYGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQG------IQEPGNMYDSR 164
P Q GG +Q+ G + G Q+ MQ+PS YG + QG PG++
Sbjct: 518 PMHQSYGGYGGSQQ--GYPSAGGQHQMQQPSRPYGMQGSAEQGYGPPRPAAPPGDVPYQG 575
Query: 165 PNNQSPQYG 191
P +P YG
Sbjct: 576 PTPAAPSYG 584
>At1g34360.1 68414.m04266 translation initiation factor 3 (IF-3)
family protein low similarity to Translation initiation
factor IF-3 from [subsp. Schizaphis graminum] {Buchnera
aphidicola} SP|P46243, {Salmonella typhimurium}
SP|P33321; contains Pfam profiles PF05198: Translation
initiation factor IF-3 N-terminal domain, PF00707:
Translation initiation factor IF-3 C-terminal domain
Length = 520
Score = 30.3 bits (65), Expect = 0.59
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +3
Query: 27 QSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGI-G 203
Q+ NQ+ G++ P N P PD A Q Q G + P+ Q P P
Sbjct: 405 QAPNQQSTGRFNPQFPNQRPSPPQSRFPDQAPNQ--QPSGPSPNRHPDRQGPP--PRFQN 460
Query: 204 IGPNGLQGPTGQYRPGSP 257
PN Q PTG++ P P
Sbjct: 461 QAPN--QQPTGRFEPQPP 476
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 29.9 bits (64), Expect = 0.77
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)
Frame = +3
Query: 30 SRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQ-------Y 188
+ N GG + G R G +G +A G G + PG +RPN + +
Sbjct: 357 NNNNAIGGNFQGGENRGFGR--GNWGRGNAQGMGGRGPGGPMRNRPNGMGGRGLMGNGGF 414
Query: 189 GPGIGIGP 212
G G+G GP
Sbjct: 415 GQGMGTGP 422
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 29.9 bits (64), Expect = 0.77
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
Frame = +3
Query: 15 YGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQE--PGNMYDSRPNNQSPQY 188
+GGG +N+ GG++ + G G D G G PG Y + P P
Sbjct: 544 FGGG--KNRRSGGRFGGRDFRRESFSRGGGGADYYGGGGGYGGVPGGGYGAMPGGYGPVP 601
Query: 189 GPGIGIGPNGLQGPTGQ 239
G G G P G P G+
Sbjct: 602 GGGYGNVPGGGYAPYGR 618
>At5g44780.1 68418.m05488 expressed protein low similarity to
SP|Q38732 DAG protein, chloroplast precursor
{Antirrhinum majus}
Length = 723
Score = 29.5 bits (63), Expect = 1.0
Identities = 24/69 (34%), Positives = 27/69 (39%)
Frame = +3
Query: 24 GQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIG 203
G R + G P NQ + G P GQG Q P Y PNN YG G
Sbjct: 339 GTLRQGQAQGSQRPSNQVGYNQGQGAQTPPYHQGQGAQTP--PYQESPNN----YGQGAF 392
Query: 204 IGPNGLQGP 230
+ N QGP
Sbjct: 393 VQYN--QGP 399
Score = 27.5 bits (58), Expect = 4.1
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Frame = +3
Query: 63 PGNQNIMQRPSGQYGPDSAVGQGIQEP--GNMYDSRPNNQSPQYGPGIGIGPNGLQGPTG 236
P N++Q +Y + +GQG P G Y SP++G G G G L G
Sbjct: 399 PPQGNVVQTTQEKY---NQMGQGNYAPQSGGNYSPAQGAGSPRFGYGQGQGGQLLSPYRG 455
Query: 237 QYRPG 251
Y G
Sbjct: 456 NYNQG 460
Score = 26.6 bits (56), Expect = 7.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 PGXQYGGGQSRNQEPGGQ--YAPGNQ-NIMQRPSGQYGPDSAVGQGIQEP 143
P + G +N GGQ Y+P N + GQ+ P GQGIQ P
Sbjct: 511 PQGNFLQGPQQNHNQGGQWNYSPQNGGHYGPAQFGQWYPGPPQGQGIQWP 560
>At5g44240.1 68418.m05412 haloacid dehalogenase-like hydrolase family
protein similar to Potential phospholipid-transporting
ATPase (EC 3.6.3.1) from {Mus musculus} SP|P70704, {Bos
taurus} SP|Q29449; contains InterPro accession IPR005834:
Haloacid dehalogenase-like hydrolase
Length = 1107
Score = 29.5 bits (63), Expect = 1.0
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Frame = +3
Query: 57 YAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYD-------SRPNNQSPQYGPGIGIGPN 215
Y P NI+Q+ GP +G +P + ++P N+SP Y P + PN
Sbjct: 1014 YRPSKINILQQAERMGGPILTLGNIETQPRTIEKDLSPISITQPKNRSPVYEPLLSDSPN 1073
Query: 216 GLQGPTGQYRPGSP 257
+ G PG+P
Sbjct: 1074 ATRRSFG---PGTP 1084
>At2g37820.1 68415.m04643 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 290
Score = 29.5 bits (63), Expect = 1.0
Identities = 15/53 (28%), Positives = 20/53 (37%)
Frame = +3
Query: 90 PSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGPNGLQGPTGQYRP 248
PS Q +G+++ G Q P +G GP G Q P Y P
Sbjct: 176 PSDQTDASGTKSRGLKQQGGQPSPPTQWQQPHFGYPYAYGPMGQQQPYFNYHP 228
>At3g45720.1 68416.m04941 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 555
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -3
Query: 230 WPL*SVRTDSDSRSILRTLIIWSRIIHISWFLNTLSNSTIGSILST 93
W L SV D +S+LR L +W I+ + + ++ T+ L T
Sbjct: 307 WRLCSVEEVEDFKSVLRVLPLWLAILFVGTSIGVQASMTVLQALVT 352
>At5g58470.2 68418.m07323 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGI--QEPGNMYDSRPNNQSPQYG 191
GGG+ + G Y + R G YG S G Q P + S Y
Sbjct: 139 GGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYP 198
Query: 192 PGIGIGPNGLQGPTGQYRPGSP 257
P G G + PT Y G P
Sbjct: 199 PPTGYGMEAVPPPT-SYSGGPP 219
>At5g58470.1 68418.m07322 zinc finger (Ran-binding) family protein
weak similarity to SP|Q01844 RNA-binding protein EWS
(EWS oncogene) (Ewing sarcoma breakpoint region 1
protein) {Homo sapiens}; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00641: Zn-finger in Ran binding protein and others
Length = 422
Score = 27.9 bits (59), Expect = 3.1
Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 2/82 (2%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGI--QEPGNMYDSRPNNQSPQYG 191
GGG+ + G Y + R G YG S G Q P + S Y
Sbjct: 139 GGGRGGRNDSGRSYESSRYDGGSRSGGSYGSGSQRENGSYGQAPPPAAAIPSYDGSGSYP 198
Query: 192 PGIGIGPNGLQGPTGQYRPGSP 257
P G G + PT Y G P
Sbjct: 199 PPTGYGMEAVPPPT-SYSGGPP 219
>At3g59290.1 68416.m06609 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain;
similar to Af10-protein - Avena fatua, EMBL:U80041
Length = 1024
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +3
Query: 33 RNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGP 212
+ Q P GQ + + + G G Q+PG Y +Q PQY PG+ P
Sbjct: 581 QGQTPFGQASQQFNMVSHSQNHHEGMQFNNGGFTQQPG--YAGPATSQPPQYTPGVSSHP 638
Query: 213 NGLQGPTGQYRPGS 254
P ++PGS
Sbjct: 639 PSESFP---HQPGS 649
>At3g15010.2 68416.m01899 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.9 bits (59), Expect = 3.1
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 GXQYGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQ 185
G + G Q+++ G + G M RP+G YG A G GI G P +
Sbjct: 248 GGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYG---AAG-GISAYGGYSGGPPAHHMNS 303
Query: 186 YGPGIGIGPNGLQGPTGQY-RPGSPEV 263
+G+G G G G Y PG V
Sbjct: 304 THSSMGVGSAGYGGHYGGYGGPGGTGV 330
>At3g15010.1 68416.m01898 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif. (a.k.a. RRM,
RBD, or RNP domain)
Length = 404
Score = 27.9 bits (59), Expect = 3.1
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 1/87 (1%)
Frame = +3
Query: 6 GXQYGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQ 185
G + G Q+++ G + G M RP+G YG A G GI G P +
Sbjct: 248 GGKPGMPQAQDGGSGHGHVHGEGMGMVRPAGPYG---AAG-GISAYGGYSGGPPAHHMNS 303
Query: 186 YGPGIGIGPNGLQGPTGQY-RPGSPEV 263
+G+G G G G Y PG V
Sbjct: 304 THSSMGVGSAGYGGHYGGYGGPGGTGV 330
>At3g02170.1 68416.m00190 expressed protein
Length = 905
Score = 27.9 bits (59), Expect = 3.1
Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
Frame = +1
Query: 121 LDKVFKNQEICMILDQIIKVLNMDLESESVR-TDYKGQLVSIGLDLRR 261
+D++ +N C++ D ++ DL+S+S+ +++G+ I LD+ R
Sbjct: 845 IDRLQQNNSNCILEDDEEDIIWEDLQSQSMNLKEFEGETPGIVLDIER 892
>At2g33845.1 68415.m04154 DNA-binding protein-related contains weak
similarity to G-quartet DNA binding protein 3
[Tetrahymena thermophila] gi|4583503|gb|AAD25098
Length = 182
Score = 27.9 bits (59), Expect = 3.1
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +3
Query: 69 NQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPN-NQSPQYGPGIGIGPNGLQGPTGQYR 245
N N RP + GP QG P +R + NQ PQ+ P P ++ Q +
Sbjct: 7 NDNFQHRPRQRNGPPPPRRQGRNPPPPSSSTRTSQNQPPQHTPQEKKKPVFVK--VDQLK 64
Query: 246 PGSPEVKMLYQALEDNMV 299
PG+ + + ++ N V
Sbjct: 65 PGTSGHTLTVKVVDQNSV 82
>At1g15830.1 68414.m01900 expressed protein
Length = 483
Score = 27.9 bits (59), Expect = 3.1
Identities = 20/79 (25%), Positives = 33/79 (41%)
Frame = +3
Query: 18 GGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPG 197
GGG + GG+ + + G G + G+G+ + G ++ N
Sbjct: 273 GGGGDKTNGRGGEGREEDNGGGRGAEG--GGRGSTGEGVTDGGGRTGNKGGNGG---SIK 327
Query: 198 IGIGPNGLQGPTGQYRPGS 254
IG+G NG+ G TG G+
Sbjct: 328 IGVGTNGITGGTGGGEAGA 346
>At4g39260.1 68417.m05557 glycine-rich RNA-binding protein 8 (GRP8)
(CCR1) SP|Q03251 Glycine-rich RNA-binding protein 8
(CCR1 protein) (GRP8) {Arabidopsis thaliana} isoform
contains a non-consensus CG acceptor splice site at
intron 2
Length = 169
Score = 27.5 bits (58), Expect = 4.1
Identities = 22/66 (33%), Positives = 27/66 (40%)
Frame = +3
Query: 6 GXQYGGGQSRNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQ 185
G + GGG + GG Y+ G +R SG YG S G G G Y +
Sbjct: 100 GYRSGGGGGYSGGGGGGYSGGGGGGYERRSGGYG--SGGGGG----GRGYGGGGRREGGG 153
Query: 186 YGPGIG 203
YG G G
Sbjct: 154 YGGGDG 159
>At2g07880.1 68415.m01007 hypothetical protein
Length = 173
Score = 27.5 bits (58), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Frame = -3
Query: 389 LEFRFDH-LDHIDY*DLEFHFDH-LDH-----IEFQNHHIVLQGLIQH 267
+E+ H LD Y +E+H H LD +E+ +HH + Q L QH
Sbjct: 31 VEYHHHHSLDQSLYQQVEYHHHHSLDQSLYQQVEYHHHHSLDQSLYQH 78
>At4g08150.1 68417.m01346 homeobox protein knotted-1 like 1 (KNAT1)
identical to homeobox protein knotted-1 like 1 (KNAT1)
SP:P46639 from [Arabidopsis thaliana]
Length = 398
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 54 QYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPG 197
+Y N QR S Y P S+ + + ++ NN S YGPG
Sbjct: 3 EYQHDNSTTPQRVSFLYSPISSSNKN-DNTSDTNNNNNNNNSSNYGPG 49
>At3g22520.1 68416.m02846 expressed protein
Length = 600
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 36 NQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYD 158
N E Y N+MQ+P + G DS+V + P Y+
Sbjct: 361 NPEEFDSYLNSLDNLMQQPPEEVGRDSSVLVSVSSPMREYE 401
>At2g30380.1 68415.m03697 expressed protein contains Pfam profile
PF04859: Plant protein of unknown function (DUF641);
expression supported by MPSS
Length = 519
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 56 ICSWKSKHYAK-AKWTVWTR*CCWTRYSRTRKYV 154
IC ++ H+ K A WT+ T+ WT+ + KYV
Sbjct: 475 ICDYEPSHHWKVAIWTMDTQEETWTKSLKLTKYV 508
>At1g62130.1 68414.m07010 AAA-type ATPase family protein contains
Pfam domain, PF00004: ATPase, AAA family
Length = 1025
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/60 (21%), Positives = 25/60 (41%)
Frame = +3
Query: 60 APGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGPNGLQGPTGQ 239
+PG + + PD + G+ I D P+++ + G G G + + PT +
Sbjct: 3 SPGRSESISGENNTTLPDGSSGKRIPPSSPSGDKSPSSKRSKLGDGSGASTDSSEAPTSE 62
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 2/82 (2%)
Frame = +3
Query: 39 QEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGIGIGPNG 218
Q P AP + P Q+ A G+ P PN SPQ P
Sbjct: 245 QPPASAAAPPSLTQQGLPPQQFIQPPASQHGLSPPSLQLPQLPNQFSPQQEPYFPPSGQS 304
Query: 219 LQGPTGQ--YRPGSPEVKMLYQ 278
PT Q Y+P P + L+Q
Sbjct: 305 QPPPTIQPPYQP-PPPTQSLHQ 325
>At4g32760.1 68417.m04661 VHS domain-containing protein / GAT
domain-containing protein weak similarity to hepatocyte
growth factor-regulated tyrosine kinase substrate HRS
isoform 2 [Homo sapiens] GI:9022389; contains Pfam
profiles PF00790: VHS domain, PF03127: GAT domain
Length = 838
Score = 26.2 bits (55), Expect = 9.5
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)
Frame = +3
Query: 45 PGGQYAP-GN--QNIMQRPSGQYGPDSAVGQ-GIQEPGNMYDSRPNNQ--SPQYGPGI 200
P AP GN QNI P G P+S G+ G+Q+ +Q P YG G+
Sbjct: 540 PSPATAPSGNPAQNIPLNPQGHQQPNSQAGEAGLQQSNGFAPQVGYSQFEQPSYGQGV 597
>At3g62300.1 68416.m06999 agenet domain-containing protein contains
Pfam PF05641: Agenet domain
Length = 722
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +1
Query: 13 NMEVVKVGIKSPEVNMLLEIKTLCKGQVDSMDPIVLLDKVFKNQEICMILDQIIKVLNMD 192
+MEV KV +SP + LLE + C+ + D++ +V+ + + + D I + +D
Sbjct: 555 SMEVFKVVPQSPHFSPLLESEEECR-EGDAIGRMVMFSSLLEKVNNLQVDDPISSINRID 613
>At3g61040.1 68416.m06830 cytochrome P450 family protein similar to
cytochrome P450 monooxygenase - Arabidopsis thaliana,
EMBL:D78600
Length = 498
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +3
Query: 75 NIMQRPSGQYGPDSAVGQGIQEPGNMYDSRPNNQSPQYGPGI 200
N+ + P+ Q+ P+ +G+GI GN ++ P + PG+
Sbjct: 402 NVWKNPT-QFEPERFLGRGIDVKGNHFELIPFGAGRRICPGM 442
>At3g45680.1 68416.m04937 proton-dependent oligopeptide transport
(POT) family protein contains Pfam profile: PF00854 POT
family
Length = 558
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -3
Query: 230 WPL*SVRTDSDSRSILRTLIIWSRIIHIS 144
W L SV+ D ++ILR +W II +S
Sbjct: 309 WRLCSVQEVEDFKAILRVFPLWLSIIFVS 337
>At1g22760.1 68414.m02844 polyadenylate-binding protein 3 (PABP3)
Length = 660
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 33 RNQEPGGQYAPGNQNIMQRPSGQYGPDSAVGQGIQEP 143
RN PG +Y G N G+ G DS+V QGI P
Sbjct: 521 RNPSPGMRYMNGASN------GRNGMDSSVPQGILPP 551
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,679,655
Number of Sequences: 28952
Number of extensions: 169291
Number of successful extensions: 651
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 593
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 683042040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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