Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20144
         (507 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0002 - 15280292-15281550,15282714-15282840                       28   3.7  
01_01_0522 - 3834551-3835451,3835992-3836572                           28   3.7  
06_01_0389 + 2779790-2779891,2780378-2781912,2782087-2782135,278...    28   5.0  
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308...    28   5.0  
02_02_0200 - 7718760-7718816,7718910-7719011,7719643-7719726,771...    27   6.5  
03_05_1036 + 29875585-29875648,29875742-29875956                       27   8.7  

>06_03_0002 - 15280292-15281550,15282714-15282840
          Length = 461

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 309 RVCTKLV*SFSLAGKYKLAILLSRSVRNIICV 404
           R C + V  + +AG+++ A++    V N ICV
Sbjct: 196 RCCNRCVHPYCIAGEHRAALIQPIDVENFICV 227


>01_01_0522 - 3834551-3835451,3835992-3836572
          Length = 493

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +1

Query: 124 PCIQPPLVCPKNTEHRARHAGKCACCPACVTLLGEG-ATCKIYSKN*AKPPPLCVRSLSN 300
           P IQP L C     H+  HA +CA   A     G+G    +      A+P  + V  ++ 
Sbjct: 271 PTIQPVLSCIFRGVHKCHHAKECAGGGAAAGNNGDGDGNDEEAETETAEPEVVVVEPVAA 330

Query: 301 ASKEF 315
            SK F
Sbjct: 331 RSKSF 335


>06_01_0389 +
           2779790-2779891,2780378-2781912,2782087-2782135,
           2782620-2782683,2782755-2782843
          Length = 612

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = -3

Query: 379 RDRSIASLYFPANENDYTSLVQTLLMHLRGSLHTAEGVSPSSSNKSCKLHLHQVKLHKRD 200
           RD  +   Y+PA END           L     ++   +  S +K CK  LH +  H  +
Sbjct: 518 RDMQLREDYYPAPENDLMFTEMRAESWLSAIEESSILAALGSVSKMCKPVLHVIIGHV-E 576

Query: 199 NKHTFQRVWRDAQCS*GKQVVAVCMDFFH 113
            +H  Q+  + A  S  + + ++  D+ H
Sbjct: 577 LQHRLQQGLKAALVSKEQPISSIRTDYHH 605


>01_01_0409 -
           3084821-3084988,3085069-3085155,3085270-3085476,
           3085904-3085985,3086085-3086275,3086410-3086616,
           3086709-3086871,3087905-3087960,3088035-3088148,
           3088599-3089807
          Length = 827

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 142 LVCPKNTEHRARHAGKCACCP 204
           L C K++  R  HAGKC  CP
Sbjct: 313 LQCGKHSCERGCHAGKCGGCP 333


>02_02_0200 -
           7718760-7718816,7718910-7719011,7719643-7719726,
           7719821-7719916,7720016-7720066,7720162-7720302,
           7720717-7720773,7720864-7720938,7721033-7721305,
           7721382-7721441,7721531-7721620,7722519-7722638
          Length = 401

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 127 MDFFHSSLYHIPKHRTLLTQRMP 59
           M+F   SLY + KH + + QRMP
Sbjct: 149 MEFVPESLYRVLKHYSNMNQRMP 171


>03_05_1036 + 29875585-29875648,29875742-29875956
          Length = 92

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 4/84 (4%)
 Frame = +1

Query: 19  KNFKMKTLIFIMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKCAC 198
           K   +  ++ ++    V     GA       C    CIQ   +  KN   +      C C
Sbjct: 9   KKLSLTFVVLLLAGLVVLGEMAGAATAAAADCSTVRCIQGGYITCKNYPGKKLDGCVCLC 68

Query: 199 CPA----CVTLLGEGATCKIYSKN 258
            P     CV  L +G++ K  + N
Sbjct: 69  APTDGERCVLHLHDGSSYKCRAPN 92


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,217,021
Number of Sequences: 37544
Number of extensions: 273583
Number of successful extensions: 718
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 718
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)