Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20144
         (507 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   3.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    22   4.2  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   5.6  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    21   5.6  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    21   7.3  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   9.7  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   9.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 346 QENISLQYFYHDL-FEI*FVYGIKLIIICTV 435
           ++N+ +   Y D  + I F Y I LI++CTV
Sbjct: 802 EDNLLVCNSYVDASYMIAFAYPIMLIVVCTV 832


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 232 HLHQVKLHKRDNKHTFQRVWRDAQ 161
           ++ +VK  K  +KH  Q  W D +
Sbjct: 325 YIPKVKNKKAGSKHLLQNTWLDPE 348


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.8 bits (44), Expect = 4.2
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 13  VFKNFKMKTLIFIMLVACVASAAYGAL 93
           +FK FK +  +++++ AC+    +  L
Sbjct: 431 LFKTFKDRKYLYMLMEACLGGELWTVL 457


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 8/23 (34%), Positives = 11/23 (47%)
 Frame = +1

Query: 169 RARHAGKCACCPACVTLLGEGAT 237
           + RH     CC  C  L G G++
Sbjct: 3   KGRHVVMSCCCWCCDNLGGPGSS 25


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = +3

Query: 279 VCKEPLKCIKRVCTKL 326
           + K PL+C+ R CT +
Sbjct: 106 ITKAPLECMCRPCTSV 121


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 336 FSLAGKYKLAILLSRSVRNIICVRNKIDNNMHCSKY 443
           + + GK  L  +      NI     K  N+++C KY
Sbjct: 131 YKIEGKVLLLPVRGAGKSNITMYDLKSHNDIYCEKY 166


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 39  VDFYNAGGMRCVSSVRCFGMWYRL 110
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 39  VDFYNAGGMRCVSSVRCFGMWYRL 110
           +D YNA  M   S+V    M YR+
Sbjct: 176 LDVYNADIMAATSNVIIASMQYRV 199


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,266
Number of Sequences: 438
Number of extensions: 2901
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)