Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20144
         (507 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46800.1 68416.m05080 DC1 domain-containing protein contains ...    33   0.15 
At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin ...    29   1.8  
At1g43910.1 68414.m05066 AAA-type ATPase family protein contains...    28   3.1  
At2g31440.1 68415.m03841 expressed protein identical to cDNA end...    28   4.2  
At1g54890.1 68414.m06267 late embryogenesis abundant protein-rel...    28   4.2  
At1g55330.1 68414.m06321 arabinogalactan-protein (AGP21)               27   7.3  

>At3g46800.1 68416.m05080 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 682

 Score = 32.7 bits (71), Expect = 0.15
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 11/86 (12%)
 Frame = +1

Query: 82  YGALVC---GTDYCEKNPCIQ--PPLVCPKNTEHRARHAGKCA--CCPACVTLLGEGATC 240
           YG  VC   G D      C++  P +  P + +H  +   KC   CC  C++ L  G  C
Sbjct: 34  YGGYVCNEVGCDTLFHKECVESVPEIKHPSHPQHPLKLNLKCGRFCCSLCISGLQVGYHC 93

Query: 241 KIYSKN----*AKPPPLCVRSLSNAS 306
            I   N     A+ PP    S S++S
Sbjct: 94  SICDFNVHLVCARRPPSSTSSSSSSS 119


>At1g78860.1 68414.m09192 curculin-like (mannose-binding) lectin
           family protein low similarity to Ser/Thr protein kinase
           [Zea mays] GI:2598067; contains Pfam profile PF01453:
           Lectin (probable mannose binding)
          Length = 443

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 184 GKCACCPACVTLLGEGATCKIYS 252
           G+C  CP+ + LLG   TCKI S
Sbjct: 330 GQCNACPSDIGLLGWDETCKIPS 352


>At1g43910.1 68414.m05066 AAA-type ATPase family protein contains
           Pfam profile: ATPase family PF00004
          Length = 475

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +1

Query: 49  IMLVACVASAAYGALVCGTDYCEKNPCIQPPLVCPKNTE 165
           + L  C+A  + G L+ G+    KNP  +P L  P NT+
Sbjct: 81  VYLPTCLAGLSTGKLLVGSSNL-KNPAAEPKLGIPVNTK 118


>At2g31440.1 68415.m03841 expressed protein identical to cDNA
           endonuclease III homologue (nth1 gene) GI:11181951
          Length = 250

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 156 LRANKWWLYAWIFFTVVC 103
           L+AN WW YA +  T VC
Sbjct: 59  LKANVWWPYALLVITSVC 76


>At1g54890.1 68414.m06267 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein (EMB7) GI:1350543 from
           [Picea glauca]
          Length = 347

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)
 Frame = +1

Query: 43  IFIMLVACVASAAY-GALVCGTDYCEKNPCIQPPLVCPKNTEHRARHAGKC-ACCPACVT 216
           + +ML AC+       AL   T +  K+PC      CPK     +   G   AC   C  
Sbjct: 13  LVVMLYACIVVVQLEAALETKTCFQRKSPCFLKKQTCPKQCPSFSPPNGSTKACVIDCFN 72

Query: 217 LLGEGATCK 243
            + + ATC+
Sbjct: 73  PICK-ATCR 80


>At1g55330.1 68414.m06321 arabinogalactan-protein (AGP21)
          Length = 58

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 28 KMKTLIFIMLVACVASAAYGALV 96
          KMK ++FIM+VA   SAA  A V
Sbjct: 5  KMKMMVFIMVVAVAFSAATAATV 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,795,927
Number of Sequences: 28952
Number of extensions: 219843
Number of successful extensions: 611
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 596
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)