Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20143
         (621 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0061 + 815761-816117,817298-818002                               29   2.3  
01_06_1703 + 39301075-39301829,39302735-39303560                       28   6.9  
01_01_0216 + 1843413-1843509,1844583-1844694,1844841-1844908,184...    28   6.9  
01_03_0149 + 13194866-13195012,13196576-13196828,13197810-131981...    27   9.1  

>10_01_0061 + 815761-816117,817298-818002
          Length = 353

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/22 (59%), Positives = 18/22 (81%), Gaps = 1/22 (4%)
 Frame = +1

Query: 517 LTPIPSAYLADKF-GRKTTLLL 579
           LTP+  A++AD F GR+TT+LL
Sbjct: 91  LTPLVGAFIADSFLGRRTTILL 112


>01_06_1703 + 39301075-39301829,39302735-39303560
          Length = 526

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 487 DSLNNDTRSALTPIPSAYLADKF-GRKTTLLL 579
           D  N     ++TP+ +AYLAD F GR  T+LL
Sbjct: 38  DVTNWQGTGSITPLVAAYLADAFLGRYWTILL 69


>01_01_0216 +
           1843413-1843509,1844583-1844694,1844841-1844908,
           1845165-1845297,1845404-1845503,1845562-1845722,
           1846095-1846188,1846273-1846426,1846597-1846743,
           1846819-1846892,1846985-1847073,1847161-1847275,
           1847569-1847751
          Length = 508

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +1

Query: 541 LADKFGRKTTLLLGAIP 591
           LADKFGR  T +L AIP
Sbjct: 113 LADKFGRTRTFILDAIP 129


>01_03_0149 +
           13194866-13195012,13196576-13196828,13197810-13198173,
           13198283-13198501,13199888-13200002,13200697-13200948,
           13201149-13201442
          Length = 547

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -2

Query: 377 SHIMLFHIPSNVNEFLLPFCCININIFTLLY 285
           ++I ++ I +  NE +L F  +N N+  LLY
Sbjct: 216 NYIPIYEIEATRNETILEFAKLNFNLLQLLY 246


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,507,230
Number of Sequences: 37544
Number of extensions: 231285
Number of successful extensions: 501
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 501
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)