Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20143
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical ...    32   0.38 
AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical ...    30   1.2  
AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical ...    30   1.2  
Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical pr...    29   2.0  
AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical ...    29   2.0  
AC024761-14|AAM97970.1|   98|Caenorhabditis elegans Peroxiredoxi...    28   4.7  
Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AF024502-1|AAK77624.1|  416|Caenorhabditis elegans Hypothetical
           protein M151.7 protein.
          Length = 416

 Score = 31.9 bits (69), Expect = 0.38
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 412 LAVSYSTVS*IRRKFNTNNCLP-RIMDSLNNDTRSALTPIPSAYLA 546
           L+ S S ++ + RK    NC   R   S N+DT +++TP P  +LA
Sbjct: 269 LSASNSNIARLERKNEKLNCRSARCSTSFNSDTSTSITPEPHGHLA 314


>AF002196-9|AAV34797.1|  475|Caenorhabditis elegans Hypothetical
           protein C09D4.1b protein.
          Length = 475

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 526 IPSAYLADKFGRKTTLLLGAIPS*SAGTWYR 618
           IP+A+L DK+G + ++LLGA+ +   G W +
Sbjct: 94  IPAAWLLDKWGLRLSVLLGALGN-CVGAWIK 123


>AF002196-8|AAB53976.2|  586|Caenorhabditis elegans Hypothetical
           protein C09D4.1a protein.
          Length = 586

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +1

Query: 526 IPSAYLADKFGRKTTLLLGAIPS*SAGTWYR 618
           IP+A+L DK+G + ++LLGA+ +   G W +
Sbjct: 205 IPAAWLLDKWGLRLSVLLGALGN-CVGAWIK 234


>Z92806-1|CAB07258.1|  802|Caenorhabditis elegans Hypothetical
           protein K10G4.1 protein.
          Length = 802

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
 Frame = +1

Query: 154 LVNSPILL*FITITMISNFIV*NITSLLKIQCSKISFQIAQ**I*SNVNIFILIQQNGSK 333
           L+N+P +L  ++ T  S  +   + S+   Q ++I   I Q  I    + F+  QQNG  
Sbjct: 103 LINNPAMLP-LSFTTRSLILPYTLNSMKGAQLTEIYMSIEQTRITMRFSYFLQNQQNGRT 161

Query: 334 NSFTLEGIWNSIMCD--PHYCNSRYLLRLAVSYSTV 435
           + +      + + CD       +  ++ LA+S+ TV
Sbjct: 162 HQYERYQNGSRVQCDLQKEVARNENVVSLAISHLTV 197


>AF039046-2|AAB94218.2|  516|Caenorhabditis elegans Hypothetical
           protein R09B5.11 protein.
          Length = 516

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/19 (68%), Positives = 15/19 (78%)
 Frame = +1

Query: 532 SAYLADKFGRKTTLLLGAI 588
           S +LADKFGRK+TLL   I
Sbjct: 118 SGFLADKFGRKSTLLYNNI 136


>AC024761-14|AAM97970.1|   98|Caenorhabditis elegans Peroxiredoxin
           protein 6, isoform b protein.
          Length = 98

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 377 SHIMLFHIPSNVNEFLLPFCCINI-NIFTLLYIYYCAIWNEIFEH 246
           +H +   +P  +   LLPF  + I  IF + +IY C I+  I+ H
Sbjct: 13  AHAIYEFVPEYLLWLLLPFFILFIFPIFLVFFIYGCVIFVHIYGH 57


>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 292 NVNIFILIQQNGSK-NSFTLEGIWNSIMCDPHY 387
           ++ IF    +NGS   SF++E  WN +   PH+
Sbjct: 193 DIKIFKTEMKNGSNVESFSVEFYWNPLSHQPHF 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,140,107
Number of Sequences: 27780
Number of extensions: 218557
Number of successful extensions: 514
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)