Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20143
         (621 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02170.1 68416.m00190 expressed protein                             30   1.4  
At2g16750.1 68415.m01921 protein kinase family protein contains ...    28   4.3  
At3g31370.1 68416.m03999 hypothetical protein contains similarit...    28   5.7  
At5g01990.1 68418.m00118 auxin efflux carrier family protein con...    27   7.6  

>At3g02170.1 68416.m00190 expressed protein
          Length = 905

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 2/87 (2%)
 Frame = +1

Query: 232 LLKIQCSKISFQIAQ**I*SNVNIFILIQQNGSKNSFTLEGIWNSIMCDPHYCNSRYLLR 411
           L  ++ S ISFQ+ Q  +  N  +F +++QN + N    +             N    +R
Sbjct: 735 LRDLEYSMISFQLHQTRLPINPGLFFILEQNKASNVTLPDNKHRGRGFRQQQTNPTETIR 794

Query: 412 LAVSYSTVS*I-RRKFNTNNCL-PRIM 486
             + + TV+ I  RKF    C+ PR++
Sbjct: 795 RKLVFDTVNEILARKFTAEGCIKPRLI 821


>At2g16750.1 68415.m01921 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 617

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = -1

Query: 105 TKRYNR*GFILEGLCIVGLLVHDARRTRAMS 13
           TK+    G +L+G  ++G+LV +A+R  AMS
Sbjct: 74  TKKIELKGEVLKGNSVLGVLVKEAKRYNAMS 104


>At3g31370.1 68416.m03999 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 272

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 331 KNSFTLEGIWNSIMCDPHYCNSRYL 405
           K   TLE +W  +M D  +C+S  L
Sbjct: 125 KTKLTLEHVWREVMFDQKWCSSNAL 149


>At5g01990.1 68418.m00118 auxin efflux carrier family protein
           contains auxin efflux carrier domain, Pfam:PF03547
          Length = 431

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = +2

Query: 440 ESEESSIPTTAYQ--GSWIVSIMILARL*HRFHPPISPTNSEEK 565
           +SE+ SI  TAY   G W+ +I++   +   F PP    ++EE+
Sbjct: 158 DSEKCSIDGTAYISFGQWVGAIILYTYVYQMFAPPPEGFDAEEE 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,266,008
Number of Sequences: 28952
Number of extensions: 197412
Number of successful extensions: 418
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)