Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20142
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    26   3.8  
SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces po...    25   5.1  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    25   5.1  
SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion transporter|...    25   5.1  
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|...    25   6.7  
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.9  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    25   8.9  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   8.9  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = +1

Query: 259 GTPWSTATSCGSATDSTLSESTSP 330
           GT    A S GSAT  T SE T+P
Sbjct: 927 GTSNKPAFSFGSATSKTTSEGTAP 950


>SPBC1773.13 |||aromatic aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 481

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +3

Query: 267 MEYCYKLWVGNGQHIVRKYFPY 332
           +EYC +L V  G H++ + + Y
Sbjct: 140 LEYCLRLLVNYGDHVLTEKYTY 161


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 115 NKELEEKLYNSILTGDYDSAVRQSLE 192
           + +LE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPAC17A2.14 ||SPAC17G6.01|CorA family magnesium ion
           transporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +3

Query: 327 PYNFRLIMAGNFVKLIYRNYNLALKLGPTLDPANERLAYRR 449
           P N   +   NF  +++R+  +   + PT  PAN R   R+
Sbjct: 362 PSNSEYLKPLNFYLVVFRDGIITFHMNPTPHPANVRRRIRQ 402


>SPAC3A12.05c |taf2||TATA-binding protein associated factor
            Taf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1174

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = +1

Query: 409  PLLIPRTRDLHTGDGK 456
            P LIPR R +H G GK
Sbjct: 1106 PSLIPRLRAIHLGKGK 1121


>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 201 VLVFQALTDSAVVVTGEDAVVQFLLEFFV 115
           +  F  +T   V+V  EDAVV+F+L   V
Sbjct: 178 IYFFLGVTVQYVMVLPEDAVVEFVLTILV 206


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 441 YRRW*GKEQRPHQXXVHYLVGEHR 512
           ++ W    QR H   +H +V EHR
Sbjct: 902 FQVWLSALQRAHSYPIHLIVHEHR 925


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 256 VGTPWSTATSCGSATDSTLSESTSPITLDSSWP 354
           V TP +   S  ++T     ++TSPI   SS P
Sbjct: 208 VNTPLNQPPSYAASTQPEFQQTTSPIFSSSSTP 240


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.309    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,856,561
Number of Sequences: 5004
Number of extensions: 31746
Number of successful extensions: 52
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)