Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20142
         (515 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1127 + 34292894-34293284,34293948-34295443                       28   3.9  
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221...    27   6.8  
06_03_1490 + 30497980-30498102,30499034-30500156,30500914-305011...    27   8.9  

>02_05_1127 + 34292894-34293284,34293948-34295443
          Length = 628

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +2

Query: 107 AXLTKNSRRNCTTASSPVTTTALSVRAWNTRTKARAPS 220
           A  T++SRR  TT++S  T +A + R+ +  ++  APS
Sbjct: 8   AQTTEDSRRRATTSTSTPTCSAATSRSASRSSRPLAPS 45


>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
            17722189-17722332,17722415-17722722,17723433-17723568,
            17723748-17723841,17723976-17724073,17724951-17725004,
            17725704-17726150,17726227-17726393,17726540-17726663,
            17726751-17726837,17727000-17727056,17727492-17727560,
            17727664-17727811,17727893-17728116,17728842-17728958,
            17729649-17729742,17730573-17730640,17733278-17733334,
            17733412-17733511,17733638-17733674,17734077-17734200,
            17735254-17735322,17735371-17735410,17735905-17735993,
            17736849-17736953,17737033-17737104,17737814-17737936,
            17738049-17738117,17738966-17739059,17739145-17739231,
            17740184-17740351,17740436-17740552,17741484-17741590,
            17741671-17741803,17742564-17742667,17743504-17743629,
            17744148-17744216,17744996-17745064,17745278-17745358,
            17745444-17745533,17745896-17746000,17747803-17747873,
            17748320-17748461,17749266-17749330,17750081-17750168,
            17750236-17750325,17750437-17750673,17751064-17751170,
            17751625-17751832,17752376-17752546
          Length = 2366

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/51 (23%), Positives = 27/51 (52%)
 Frame = -1

Query: 347  DESKVIGEVLSDNVLSVADPQLVAVLHGVPTPSMIRLLXTXWMMEPLPWFS 195
            D + +I + + +N+ S+ D +  + +  +   ++IRLL T   + P  W +
Sbjct: 1137 DPAAMINQNIEENLFSMLDEETDSEIAALVRSTIIRLLYTSCPLRPSRWLA 1187


>06_03_1490 + 30497980-30498102,30499034-30500156,30500914-30501132,
            30501228-30501454,30501810-30501884,30502250-30502321,
            30502765-30502863,30502975-30503046,30503131-30503245,
            30503455-30503523,30503625-30503952,30504320-30504437,
            30504522-30505448
          Length = 1188

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = -1

Query: 512  SVFSHKVMNXXLMRSLFFSLPS-PVCKSLVRGIKS 411
            SVF + V +  L +SLF S+PS P+ KS+   + S
Sbjct: 957  SVFDYSVPSTPLQKSLFDSVPSTPMQKSVFDSVPS 991


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.309    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,890,017
Number of Sequences: 37544
Number of extensions: 237086
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)