Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20142
         (515 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18700.1 68415.m02178 glycosyl transferase family 20 protein ...    29   1.4  
At5g07400.1 68418.m00847 forkhead-associated domain-containing p...    27   9.9  
At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein ...    27   9.9  

>At2g18700.1 68415.m02178 glycosyl transferase family 20 protein /
           trehalose-phosphatase family protein similar to
           trehalose-6-phosphate synthase SL-TPS/P [Selaginella
           lepidophylla] GI:4100325; contains Pfam profiles
           PF00982: Glycosyltransferase family 20, PF02358:
           Trehalose-phosphatase
          Length = 862

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 279 SSTPWCSDSVNDQVVXYIXDDGALALVLVFQALTDSAVVVTGEDAVVQFLLEFF 118
           SS  WC +  ND +   + D       +V+    ++ V+ + ++ V QFLLE F
Sbjct: 68  SSNKWCFEFDNDSLYLQLKDGFPPETEVVYVGSLNADVLPSEQEDVSQFLLEKF 121


>At5g07400.1 68418.m00847 forkhead-associated domain-containing
           protein / FHA domain-containing protein 
          Length = 1084

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 188 WNTRTKARAPSSXMXLTT*SLTESEHHGVL 277
           W+ R +  APS  +   T    ++ HHGVL
Sbjct: 835 WSNREEREAPSIKIIFPTIERVKNGHHGVL 864


>At2g41900.1 68415.m05183 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar) and Pfam domain,
           PF00023: Ankyrin repeat
          Length = 716

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 66  GEHARHEHPEKFHYXSCL 13
           GE+AR   P KFHY SC+
Sbjct: 289 GENARRRDPRKFHY-SCV 305


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.309    0.125    0.365 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,874
Number of Sequences: 28952
Number of extensions: 175916
Number of successful extensions: 289
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 937669760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)